Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0756 and PP_0757 are separated by 20 nucleotides PP_0757 and PP_5457 overlap by 1 nucleotides PP_5457 and PP_0758 are separated by 15 nucleotides
PP_0756: PP_0756 - conserved protein of unknown function, at 871,890 to 873,161
_0756
PP_0757: PP_0757 - conserved protein of unknown function, at 873,182 to 873,367
_0757
PP_5457: PP_5457 - conserved protein of unknown function, at 873,367 to 873,627
_5457
PP_0758: PP_0758 - conserved protein of unknown function, at 873,643 to 874,263
_0758
Position (kb) 873
874 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 873.081 kb on - strand at 873.086 kb on - strand at 873.086 kb on - strand at 873.089 kb on - strand at 873.089 kb on - strand at 873.089 kb on - strand at 873.089 kb on - strand at 873.089 kb on - strand at 873.089 kb on - strand at 873.154 kb on - strand at 873.156 kb on - strand at 873.161 kb on + strand at 873.162 kb on - strand at 873.162 kb on - strand at 873.162 kb on - strand at 873.162 kb on - strand at 873.162 kb on - strand at 873.162 kb on - strand at 873.201 kb on - strand, within PP_0757 at 873.201 kb on - strand, within PP_0757 at 873.201 kb on - strand, within PP_0757 at 873.201 kb on - strand, within PP_0757 at 873.213 kb on - strand, within PP_0757 at 873.267 kb on - strand, within PP_0757 at 873.376 kb on - strand at 873.376 kb on - strand at 873.376 kb on - strand at 873.376 kb on - strand at 873.376 kb on - strand at 873.376 kb on - strand at 873.379 kb on + strand at 873.380 kb on - strand at 873.380 kb on - strand at 873.380 kb on - strand at 873.380 kb on - strand at 873.446 kb on + strand, within PP_5457 at 873.446 kb on + strand, within PP_5457 at 873.447 kb on - strand, within PP_5457 at 873.447 kb on - strand, within PP_5457 at 873.562 kb on + strand, within PP_5457 at 873.562 kb on + strand, within PP_5457 at 873.562 kb on + strand, within PP_5457 at 873.562 kb on + strand, within PP_5457 at 873.563 kb on - strand, within PP_5457 at 873.563 kb on - strand, within PP_5457 at 873.612 kb on + strand at 873.625 kb on + strand at 873.625 kb on + strand at 873.625 kb on + strand at 873.656 kb on - strand at 873.656 kb on - strand at 873.729 kb on + strand, within PP_0758 at 873.729 kb on + strand, within PP_0758 at 873.729 kb on + strand, within PP_0758 at 873.729 kb on + strand, within PP_0758 at 873.730 kb on - strand, within PP_0758 at 873.730 kb on - strand, within PP_0758 at 873.730 kb on - strand, within PP_0758 at 873.731 kb on + strand, within PP_0758 at 873.731 kb on + strand, within PP_0758 at 873.731 kb on + strand, within PP_0758 at 873.732 kb on - strand, within PP_0758 at 873.934 kb on + strand, within PP_0758 at 873.935 kb on - strand, within PP_0758 at 874.001 kb on - strand, within PP_0758 at 874.001 kb on - strand, within PP_0758 at 874.043 kb on + strand, within PP_0758 at 874.304 kb on + strand at 874.304 kb on + strand at 874.304 kb on + strand at 874.305 kb on - strand at 874.326 kb on + strand at 874.326 kb on + strand at 874.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 873,081 - -1.7 873,086 - +0.6 873,086 - +0.7 873,089 - -0.5 873,089 - -0.2 873,089 - -0.4 873,089 - +0.3 873,089 - +1.3 873,089 - -0.0 873,154 - -0.2 873,156 - -0.5 873,161 + +0.4 873,162 - -0.1 873,162 - -1.5 873,162 - -0.5 873,162 - +0.1 873,162 - +0.4 873,162 - +0.8 873,201 - PP_0757 0.10 -1.0 873,201 - PP_0757 0.10 -1.3 873,201 - PP_0757 0.10 -0.9 873,201 - PP_0757 0.10 -0.1 873,213 - PP_0757 0.17 -2.1 873,267 - PP_0757 0.46 +0.1 873,376 - +0.2 873,376 - -2.2 873,376 - -0.5 873,376 - -0.5 873,376 - +0.0 873,376 - -0.8 873,379 + +0.1 873,380 - -3.5 873,380 - -0.4 873,380 - +0.1 873,380 - -0.1 873,446 + PP_5457 0.30 -1.7 873,446 + PP_5457 0.30 -0.9 873,447 - PP_5457 0.31 -0.3 873,447 - PP_5457 0.31 -0.4 873,562 + PP_5457 0.75 +1.1 873,562 + PP_5457 0.75 +1.3 873,562 + PP_5457 0.75 +0.3 873,562 + PP_5457 0.75 +0.3 873,563 - PP_5457 0.75 -0.2 873,563 - PP_5457 0.75 +2.1 873,612 + +1.6 873,625 + +1.1 873,625 + +0.5 873,625 + -0.4 873,656 - +0.4 873,656 - -2.5 873,729 + PP_0758 0.14 -1.4 873,729 + PP_0758 0.14 +0.6 873,729 + PP_0758 0.14 -0.4 873,729 + PP_0758 0.14 -0.2 873,730 - PP_0758 0.14 -1.4 873,730 - PP_0758 0.14 +1.0 873,730 - PP_0758 0.14 +0.3 873,731 + PP_0758 0.14 -1.3 873,731 + PP_0758 0.14 -0.7 873,731 + PP_0758 0.14 -2.3 873,732 - PP_0758 0.14 -1.1 873,934 + PP_0758 0.47 -0.7 873,935 - PP_0758 0.47 +0.0 874,001 - PP_0758 0.58 +0.2 874,001 - PP_0758 0.58 -0.2 874,043 + PP_0758 0.64 -0.9 874,304 + -0.7 874,304 + +0.3 874,304 + -1.4 874,305 - +0.5 874,326 + +0.2 874,326 + -0.5 874,327 - +0.3
Or see this region's nucleotide sequence