Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0231 and PP_0232 overlap by 4 nucleotides PP_0232 and PP_0233 are separated by 13 nucleotides PP_0233 and PP_0234 are separated by 474 nucleotides
PP_0231: PP_0231 - taurine ABC transporter permease subunit, at 285,498 to 286,337
_0231
PP_0232: PP_0232 - ATP-binding taurine transporter subunit, at 286,334 to 287,122
_0232
PP_0233: PP_0233 - taurine ABC transporter periplasmic binding subunit, at 287,136 to 288,107
_0233
PP_0234: PP_0234 - outer-membrane porin E, at 288,582 to 289,916
_0234
Position (kb) 287
288
289 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 286.218 kb on + strand, within PP_0231 at 286.512 kb on - strand, within PP_0232 at 287.085 kb on + strand at 287.164 kb on + strand at 287.164 kb on + strand at 287.164 kb on + strand at 287.165 kb on - strand at 287.165 kb on - strand at 287.288 kb on - strand, within PP_0233 at 287.355 kb on + strand, within PP_0233 at 287.355 kb on + strand, within PP_0233 at 287.355 kb on + strand, within PP_0233 at 287.355 kb on + strand, within PP_0233 at 287.355 kb on + strand, within PP_0233 at 287.356 kb on - strand, within PP_0233 at 287.408 kb on - strand, within PP_0233 at 287.495 kb on + strand, within PP_0233 at 287.496 kb on - strand, within PP_0233 at 287.581 kb on + strand, within PP_0233 at 287.581 kb on + strand, within PP_0233 at 287.667 kb on - strand, within PP_0233 at 287.698 kb on + strand, within PP_0233 at 287.698 kb on + strand, within PP_0233 at 287.698 kb on + strand, within PP_0233 at 287.698 kb on + strand, within PP_0233 at 287.699 kb on - strand, within PP_0233 at 287.699 kb on - strand, within PP_0233 at 287.969 kb on - strand, within PP_0233 at 288.171 kb on + strand at 288.216 kb on - strand at 288.278 kb on - strand at 288.357 kb on - strand at 288.359 kb on + strand at 288.359 kb on + strand at 288.359 kb on + strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.362 kb on - strand at 288.362 kb on - strand at 288.409 kb on + strand at 288.421 kb on + strand at 288.446 kb on - strand at 288.446 kb on - strand at 288.446 kb on - strand at 288.467 kb on + strand at 288.482 kb on + strand at 288.482 kb on + strand at 288.483 kb on - strand at 288.502 kb on + strand at 288.550 kb on + strand at 288.550 kb on + strand at 288.550 kb on + strand at 288.562 kb on - strand at 288.568 kb on + strand at 288.569 kb on - strand at 288.569 kb on - strand at 288.586 kb on - strand at 288.586 kb on - strand at 288.586 kb on - strand at 288.586 kb on - strand at 288.693 kb on + strand at 288.693 kb on + strand at 288.694 kb on - strand at 288.694 kb on - strand at 288.694 kb on - strand at 288.694 kb on - strand at 288.763 kb on - strand, within PP_0234 at 288.791 kb on - strand, within PP_0234 at 288.791 kb on - strand, within PP_0234 at 288.929 kb on + strand, within PP_0234 at 288.967 kb on - strand, within PP_0234 at 288.967 kb on - strand, within PP_0234 at 288.987 kb on - strand, within PP_0234 at 288.987 kb on - strand, within PP_0234 at 288.987 kb on - strand, within PP_0234
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 286,218 + PP_0231 0.86 +0.0 286,512 - PP_0232 0.23 -1.2 287,085 + +0.4 287,164 + +0.5 287,164 + +0.2 287,164 + -0.3 287,165 - -0.6 287,165 - +1.4 287,288 - PP_0233 0.16 +0.3 287,355 + PP_0233 0.23 +1.4 287,355 + PP_0233 0.23 +1.3 287,355 + PP_0233 0.23 -0.4 287,355 + PP_0233 0.23 -0.3 287,355 + PP_0233 0.23 -0.6 287,356 - PP_0233 0.23 +0.4 287,408 - PP_0233 0.28 +0.2 287,495 + PP_0233 0.37 -0.5 287,496 - PP_0233 0.37 +0.5 287,581 + PP_0233 0.46 -0.4 287,581 + PP_0233 0.46 +0.1 287,667 - PP_0233 0.55 +0.2 287,698 + PP_0233 0.58 +0.5 287,698 + PP_0233 0.58 +0.3 287,698 + PP_0233 0.58 +0.3 287,698 + PP_0233 0.58 +0.2 287,699 - PP_0233 0.58 +0.0 287,699 - PP_0233 0.58 +0.7 287,969 - PP_0233 0.86 -0.4 288,171 + +0.2 288,216 - +0.9 288,278 - +0.3 288,357 - +0.9 288,359 + -0.2 288,359 + +0.3 288,359 + -0.1 288,360 - -0.8 288,360 - -0.1 288,362 - +0.2 288,362 - -1.0 288,409 + +0.6 288,421 + -0.0 288,446 - +0.6 288,446 - -0.6 288,446 - +0.5 288,467 + +4.1 288,482 + +0.3 288,482 + -1.2 288,483 - -0.2 288,502 + +0.3 288,550 + +0.6 288,550 + +0.8 288,550 + -0.7 288,562 - -0.1 288,568 + -0.2 288,569 - +1.7 288,569 - +1.2 288,586 - +1.1 288,586 - -2.2 288,586 - -0.0 288,586 - -0.3 288,693 + +0.9 288,693 + -0.0 288,694 - -1.7 288,694 - -0.3 288,694 - -1.4 288,694 - +0.0 288,763 - PP_0234 0.14 -1.2 288,791 - PP_0234 0.16 -0.4 288,791 - PP_0234 0.16 -3.0 288,929 + PP_0234 0.26 +0.2 288,967 - PP_0234 0.29 -0.8 288,967 - PP_0234 0.29 +1.3 288,987 - PP_0234 0.30 +0.6 288,987 - PP_0234 0.30 +1.3 288,987 - PP_0234 0.30 +0.6
Or see this region's nucleotide sequence