Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4627 and PP_4628 are separated by 21 nucleotides PP_4628 and PP_4629 are separated by 115 nucleotides PP_4629 and PP_5702 are separated by 59 nucleotides
PP_4627: PP_4627 - transcriptional regulator, LysR family, at 5,251,158 to 5,252,039
_4627
PP_4628: PP_4628 - conserved protein of unknown function, at 5,252,061 to 5,252,516
_4628
PP_4629: PP_4629 - Sensory box protein, at 5,252,632 to 5,253,060
_4629
PP_5702: PP_5702 - conserved protein of unknown function, at 5,253,120 to 5,253,737
_5702
Position (kb) 5252
5253 Strain fitness (log2 ratio) -2
-1
0
1 at 5251.089 kb on + strand at 5251.435 kb on + strand, within PP_4627 at 5251.436 kb on - strand, within PP_4627 at 5251.436 kb on - strand, within PP_4627 at 5251.436 kb on - strand, within PP_4627 at 5251.624 kb on - strand, within PP_4627 at 5251.719 kb on - strand, within PP_4627 at 5251.734 kb on + strand, within PP_4627 at 5251.735 kb on - strand, within PP_4627 at 5251.965 kb on - strand at 5252.215 kb on + strand, within PP_4628 at 5252.216 kb on - strand, within PP_4628 at 5252.216 kb on - strand, within PP_4628 at 5252.219 kb on + strand, within PP_4628 at 5252.219 kb on + strand, within PP_4628 at 5252.227 kb on + strand, within PP_4628 at 5252.348 kb on + strand, within PP_4628 at 5252.486 kb on - strand at 5252.502 kb on - strand at 5252.725 kb on + strand, within PP_4629 at 5252.725 kb on + strand, within PP_4629 at 5252.746 kb on + strand, within PP_4629 at 5252.758 kb on + strand, within PP_4629 at 5252.759 kb on - strand, within PP_4629 at 5252.887 kb on + strand, within PP_4629 at 5252.888 kb on - strand, within PP_4629 at 5252.962 kb on + strand, within PP_4629 at 5252.962 kb on + strand, within PP_4629 at 5252.963 kb on - strand, within PP_4629 at 5253.163 kb on + strand at 5253.241 kb on + strand, within PP_5702 at 5253.269 kb on + strand, within PP_5702 at 5253.334 kb on + strand, within PP_5702 at 5253.334 kb on + strand, within PP_5702 at 5253.335 kb on - strand, within PP_5702
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 5,251,089 + -0.2 5,251,435 + PP_4627 0.31 +0.1 5,251,436 - PP_4627 0.32 -1.5 5,251,436 - PP_4627 0.32 -1.0 5,251,436 - PP_4627 0.32 +0.6 5,251,624 - PP_4627 0.53 -0.5 5,251,719 - PP_4627 0.64 +0.3 5,251,734 + PP_4627 0.65 -0.9 5,251,735 - PP_4627 0.65 +1.0 5,251,965 - -1.9 5,252,215 + PP_4628 0.34 -1.4 5,252,216 - PP_4628 0.34 +0.1 5,252,216 - PP_4628 0.34 -0.6 5,252,219 + PP_4628 0.35 -0.2 5,252,219 + PP_4628 0.35 +0.8 5,252,227 + PP_4628 0.36 +1.4 5,252,348 + PP_4628 0.63 +0.3 5,252,486 - +0.5 5,252,502 - +1.0 5,252,725 + PP_4629 0.22 -0.6 5,252,725 + PP_4629 0.22 +0.3 5,252,746 + PP_4629 0.27 -1.2 5,252,758 + PP_4629 0.29 +1.3 5,252,759 - PP_4629 0.30 +0.6 5,252,887 + PP_4629 0.59 -0.6 5,252,888 - PP_4629 0.60 +1.4 5,252,962 + PP_4629 0.77 +1.3 5,252,962 + PP_4629 0.77 +1.1 5,252,963 - PP_4629 0.77 -0.3 5,253,163 + +0.7 5,253,241 + PP_5702 0.20 -0.9 5,253,269 + PP_5702 0.24 +1.3 5,253,334 + PP_5702 0.35 +0.7 5,253,334 + PP_5702 0.35 +1.2 5,253,335 - PP_5702 0.35 -0.4
Or see this region's nucleotide sequence