Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0584 and PP_0585 are separated by 167 nucleotides PP_0585 and PP_0586 overlap by 4 nucleotides
PP_0584: PP_0584 - Methyl-accepting chemotaxis transducer, at 681,329 to 683,272
_0584
PP_0585: PP_0585 - putative metal-sensitive transcriptional regulator, MerR family, at 683,440 to 683,850
_0585
PP_0586: PP_0586 - cadmium translocating P-type ATPase, at 683,847 to 686,246
_0586
Position (kb) 683
684 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 682.474 kb on - strand, within PP_0584 at 682.488 kb on + strand, within PP_0584 at 682.488 kb on + strand, within PP_0584 at 682.488 kb on + strand, within PP_0584 at 682.488 kb on + strand, within PP_0584 at 682.488 kb on + strand, within PP_0584 at 682.489 kb on - strand, within PP_0584 at 682.489 kb on - strand, within PP_0584 at 682.489 kb on - strand, within PP_0584 at 682.489 kb on - strand, within PP_0584 at 682.489 kb on - strand, within PP_0584 at 682.788 kb on + strand, within PP_0584 at 682.788 kb on + strand, within PP_0584 at 682.791 kb on + strand, within PP_0584 at 682.792 kb on - strand, within PP_0584 at 682.863 kb on + strand, within PP_0584 at 682.864 kb on - strand, within PP_0584 at 682.929 kb on + strand, within PP_0584 at 682.929 kb on + strand, within PP_0584 at 682.935 kb on + strand, within PP_0584 at 682.936 kb on - strand, within PP_0584 at 683.005 kb on - strand, within PP_0584 at 683.005 kb on - strand, within PP_0584 at 683.025 kb on + strand, within PP_0584 at 683.025 kb on + strand, within PP_0584 at 683.025 kb on + strand, within PP_0584 at 683.026 kb on - strand, within PP_0584 at 683.026 kb on - strand, within PP_0584 at 683.026 kb on - strand, within PP_0584 at 683.026 kb on - strand, within PP_0584 at 683.026 kb on - strand, within PP_0584 at 683.026 kb on - strand, within PP_0584 at 683.076 kb on + strand, within PP_0584 at 683.076 kb on + strand, within PP_0584 at 683.076 kb on + strand, within PP_0584 at 683.076 kb on + strand at 683.313 kb on + strand at 683.313 kb on + strand at 683.313 kb on + strand at 683.314 kb on - strand at 683.314 kb on - strand at 683.343 kb on - strand at 683.343 kb on - strand at 683.362 kb on - strand at 683.365 kb on + strand at 683.413 kb on + strand at 683.413 kb on + strand at 683.455 kb on - strand at 683.735 kb on + strand, within PP_0585 at 683.736 kb on - strand, within PP_0585 at 683.792 kb on + strand, within PP_0585 at 683.998 kb on + strand at 683.998 kb on + strand at 683.999 kb on - strand at 683.999 kb on - strand at 683.999 kb on - strand at 684.038 kb on - strand at 684.186 kb on - strand, within PP_0586 at 684.798 kb on + strand, within PP_0586 at 684.799 kb on - strand, within PP_0586
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 682,474 - PP_0584 0.59 +0.4 682,488 + PP_0584 0.60 +0.1 682,488 + PP_0584 0.60 -0.1 682,488 + PP_0584 0.60 +0.1 682,488 + PP_0584 0.60 +0.0 682,488 + PP_0584 0.60 -1.4 682,489 - PP_0584 0.60 -0.5 682,489 - PP_0584 0.60 -0.2 682,489 - PP_0584 0.60 +1.7 682,489 - PP_0584 0.60 +0.4 682,489 - PP_0584 0.60 +0.7 682,788 + PP_0584 0.75 -0.3 682,788 + PP_0584 0.75 +0.3 682,791 + PP_0584 0.75 +0.2 682,792 - PP_0584 0.75 +1.4 682,863 + PP_0584 0.79 +0.0 682,864 - PP_0584 0.79 -1.4 682,929 + PP_0584 0.82 +0.2 682,929 + PP_0584 0.82 +0.2 682,935 + PP_0584 0.83 -0.0 682,936 - PP_0584 0.83 -1.1 683,005 - PP_0584 0.86 -0.6 683,005 - PP_0584 0.86 -2.0 683,025 + PP_0584 0.87 +1.0 683,025 + PP_0584 0.87 -1.1 683,025 + PP_0584 0.87 -0.2 683,026 - PP_0584 0.87 +0.4 683,026 - PP_0584 0.87 -0.2 683,026 - PP_0584 0.87 -0.3 683,026 - PP_0584 0.87 +0.2 683,026 - PP_0584 0.87 -2.3 683,026 - PP_0584 0.87 +0.9 683,076 + PP_0584 0.90 -1.0 683,076 + PP_0584 0.90 -0.1 683,076 + PP_0584 0.90 +0.8 683,076 + -0.1 683,313 + +0.8 683,313 + -2.2 683,313 + +0.5 683,314 - -0.6 683,314 - -0.3 683,343 - -1.1 683,343 - -0.1 683,362 - -0.3 683,365 + -0.3 683,413 + +0.6 683,413 + -2.8 683,455 - +1.0 683,735 + PP_0585 0.72 -1.3 683,736 - PP_0585 0.72 -0.1 683,792 + PP_0585 0.86 -1.4 683,998 + -0.8 683,998 + -1.0 683,999 - -0.8 683,999 - +0.7 683,999 - -0.4 684,038 - +0.1 684,186 - PP_0586 0.14 +0.9 684,798 + PP_0586 0.40 +0.1 684,799 - PP_0586 0.40 +0.2
Or see this region's nucleotide sequence