Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0136 and PP_0137 are separated by 745 nucleotides PP_0137 and PP_0138 are separated by 147 nucleotides
PP_0136: PP_0136 - conserved exported protein of unknown function, at 143,551 to 144,021
_0136
PP_0137: PP_0137 - glutamate/aspartate-proton DAACS transporter, at 144,767 to 146,095
_0137
PP_0138: PP_0138 - conserved membrane protein of unknown function, at 146,243 to 147,472
_0138
Position (kb) 144
145
146
147 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 143.788 kb on + strand, within PP_0136 at 143.788 kb on + strand, within PP_0136 at 143.788 kb on + strand, within PP_0136 at 143.788 kb on + strand, within PP_0136 at 143.788 kb on + strand, within PP_0136 at 143.789 kb on - strand, within PP_0136 at 143.789 kb on - strand, within PP_0136 at 143.789 kb on - strand, within PP_0136 at 143.789 kb on - strand, within PP_0136 at 143.789 kb on - strand, within PP_0136 at 143.789 kb on - strand, within PP_0136 at 143.831 kb on - strand, within PP_0136 at 143.831 kb on - strand, within PP_0136 at 143.831 kb on - strand, within PP_0136 at 143.831 kb on - strand, within PP_0136 at 143.875 kb on + strand, within PP_0136 at 144.017 kb on - strand at 144.064 kb on + strand at 144.065 kb on - strand at 144.065 kb on - strand at 144.067 kb on + strand at 144.067 kb on + strand at 144.068 kb on - strand at 144.068 kb on - strand at 144.068 kb on - strand at 144.085 kb on - strand at 144.086 kb on + strand at 144.086 kb on + strand at 144.087 kb on - strand at 144.099 kb on + strand at 144.099 kb on + strand at 144.099 kb on + strand at 144.099 kb on + strand at 144.099 kb on + strand at 144.100 kb on - strand at 144.100 kb on - strand at 144.100 kb on - strand at 144.160 kb on + strand at 144.161 kb on - strand at 144.178 kb on + strand at 144.178 kb on + strand at 144.179 kb on - strand at 144.202 kb on + strand at 144.203 kb on - strand at 144.262 kb on - strand at 144.294 kb on + strand at 144.295 kb on - strand at 144.295 kb on - strand at 144.295 kb on - strand at 144.295 kb on - strand at 144.352 kb on + strand at 144.352 kb on + strand at 144.353 kb on - strand at 144.386 kb on + strand at 144.386 kb on + strand at 144.386 kb on + strand at 144.386 kb on + strand at 144.387 kb on - strand at 144.439 kb on + strand at 144.439 kb on + strand at 144.503 kb on - strand at 144.545 kb on - strand at 144.581 kb on - strand at 144.605 kb on + strand at 144.605 kb on + strand at 144.605 kb on + strand at 144.606 kb on - strand at 144.606 kb on - strand at 144.606 kb on - strand at 144.660 kb on + strand at 144.660 kb on + strand at 144.660 kb on + strand at 144.661 kb on - strand at 144.661 kb on - strand at 144.661 kb on - strand at 144.661 kb on - strand at 144.661 kb on - strand at 144.661 kb on - strand at 144.661 kb on - strand at 144.661 kb on - strand at 144.688 kb on + strand at 144.688 kb on - strand at 144.688 kb on - strand at 144.688 kb on - strand at 144.760 kb on + strand at 144.760 kb on + strand at 145.025 kb on + strand, within PP_0137 at 145.025 kb on + strand, within PP_0137 at 145.026 kb on - strand, within PP_0137 at 145.026 kb on - strand, within PP_0137 at 145.059 kb on + strand, within PP_0137 at 145.059 kb on + strand, within PP_0137 at 145.129 kb on + strand, within PP_0137 at 145.129 kb on + strand, within PP_0137 at 145.139 kb on + strand, within PP_0137 at 145.139 kb on + strand, within PP_0137 at 145.162 kb on - strand, within PP_0137 at 145.162 kb on - strand, within PP_0137 at 145.324 kb on + strand, within PP_0137 at 145.380 kb on - strand, within PP_0137 at 145.380 kb on - strand, within PP_0137 at 145.380 kb on - strand, within PP_0137 at 145.475 kb on + strand, within PP_0137 at 145.475 kb on + strand, within PP_0137 at 145.475 kb on + strand, within PP_0137 at 145.476 kb on - strand, within PP_0137 at 145.476 kb on - strand, within PP_0137 at 145.506 kb on + strand, within PP_0137 at 145.586 kb on + strand, within PP_0137 at 145.586 kb on + strand, within PP_0137 at 145.643 kb on + strand, within PP_0137 at 145.701 kb on + strand, within PP_0137 at 145.702 kb on - strand, within PP_0137 at 145.718 kb on + strand, within PP_0137 at 145.719 kb on - strand, within PP_0137 at 145.754 kb on + strand, within PP_0137 at 145.754 kb on + strand, within PP_0137 at 145.842 kb on + strand, within PP_0137 at 145.842 kb on + strand, within PP_0137 at 145.943 kb on - strand, within PP_0137 at 145.943 kb on - strand, within PP_0137 at 146.006 kb on + strand at 146.006 kb on + strand at 146.006 kb on + strand at 146.007 kb on - strand at 146.007 kb on - strand at 146.007 kb on - strand at 146.030 kb on + strand at 146.031 kb on - strand at 146.031 kb on - strand at 146.033 kb on + strand at 146.034 kb on - strand at 146.034 kb on - strand at 146.067 kb on + strand at 146.067 kb on + strand at 146.204 kb on + strand at 146.238 kb on + strand at 146.238 kb on + strand at 146.238 kb on + strand at 146.238 kb on + strand at 146.238 kb on + strand at 146.239 kb on - strand at 146.239 kb on - strand at 146.239 kb on - strand at 146.239 kb on - strand at 146.239 kb on - strand at 146.239 kb on - strand at 146.239 kb on - strand at 146.585 kb on - strand, within PP_0138 at 146.721 kb on - strand, within PP_0138 at 146.861 kb on + strand, within PP_0138 at 146.861 kb on + strand, within PP_0138 at 146.861 kb on + strand, within PP_0138 at 146.862 kb on - strand, within PP_0138 at 146.862 kb on - strand at 146.862 kb on - strand, within PP_0138 at 147.023 kb on + strand, within PP_0138 at 147.023 kb on + strand, within PP_0138 at 147.023 kb on + strand, within PP_0138 at 147.023 kb on + strand, within PP_0138 at 147.023 kb on + strand, within PP_0138 at 147.023 kb on + strand, within PP_0138 at 147.024 kb on - strand, within PP_0138 at 147.024 kb on - strand, within PP_0138 at 147.024 kb on - strand, within PP_0138 at 147.024 kb on - strand, within PP_0138 at 147.083 kb on + strand, within PP_0138 at 147.083 kb on + strand, within PP_0138
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 143,788 + PP_0136 0.50 +0.2 143,788 + PP_0136 0.50 -0.6 143,788 + PP_0136 0.50 -0.6 143,788 + PP_0136 0.50 -0.6 143,788 + PP_0136 0.50 -0.6 143,789 - PP_0136 0.51 -0.1 143,789 - PP_0136 0.51 -0.7 143,789 - PP_0136 0.51 +0.6 143,789 - PP_0136 0.51 +0.8 143,789 - PP_0136 0.51 -1.7 143,789 - PP_0136 0.51 +0.4 143,831 - PP_0136 0.59 -0.5 143,831 - PP_0136 0.59 -0.3 143,831 - PP_0136 0.59 -0.2 143,831 - PP_0136 0.59 -0.9 143,875 + PP_0136 0.69 +0.4 144,017 - +0.7 144,064 + -0.4 144,065 - +0.6 144,065 - -0.0 144,067 + -0.9 144,067 + -0.1 144,068 - -0.6 144,068 - +0.5 144,068 - +0.2 144,085 - -0.6 144,086 + +0.6 144,086 + -0.4 144,087 - -0.3 144,099 + -1.3 144,099 + -1.7 144,099 + +0.4 144,099 + -0.4 144,099 + -0.3 144,100 - -1.0 144,100 - +0.6 144,100 - -1.4 144,160 + +0.4 144,161 - -0.4 144,178 + +1.1 144,178 + -0.4 144,179 - -1.0 144,202 + -1.5 144,203 - +0.4 144,262 - +0.7 144,294 + -0.9 144,295 - -0.1 144,295 - -1.7 144,295 - -0.2 144,295 - +1.2 144,352 + -2.6 144,352 + -0.8 144,353 - +0.3 144,386 + +1.4 144,386 + -0.6 144,386 + -0.3 144,386 + -1.1 144,387 - +1.9 144,439 + -3.1 144,439 + +0.1 144,503 - -1.0 144,545 - +0.0 144,581 - -0.7 144,605 + -0.8 144,605 + -0.6 144,605 + -0.4 144,606 - -0.4 144,606 - -0.5 144,606 - -2.9 144,660 + +0.9 144,660 + -1.0 144,660 + +1.0 144,661 - -2.4 144,661 - -1.3 144,661 - -0.3 144,661 - -1.7 144,661 - -0.7 144,661 - +0.3 144,661 - -0.8 144,661 - -0.6 144,688 + -0.6 144,688 - +0.4 144,688 - -0.3 144,688 - -0.4 144,760 + -1.7 144,760 + +0.5 145,025 + PP_0137 0.19 -0.0 145,025 + PP_0137 0.19 -0.6 145,026 - PP_0137 0.19 -1.0 145,026 - PP_0137 0.19 -0.6 145,059 + PP_0137 0.22 -0.8 145,059 + PP_0137 0.22 -0.3 145,129 + PP_0137 0.27 +0.6 145,129 + PP_0137 0.27 -2.5 145,139 + PP_0137 0.28 -0.6 145,139 + PP_0137 0.28 -1.1 145,162 - PP_0137 0.30 +0.4 145,162 - PP_0137 0.30 -2.2 145,324 + PP_0137 0.42 -0.1 145,380 - PP_0137 0.46 -0.1 145,380 - PP_0137 0.46 -2.9 145,380 - PP_0137 0.46 -0.9 145,475 + PP_0137 0.53 -1.5 145,475 + PP_0137 0.53 -0.8 145,475 + PP_0137 0.53 -1.1 145,476 - PP_0137 0.53 +1.4 145,476 - PP_0137 0.53 +0.8 145,506 + PP_0137 0.56 -1.5 145,586 + PP_0137 0.62 -0.8 145,586 + PP_0137 0.62 +0.2 145,643 + PP_0137 0.66 -0.1 145,701 + PP_0137 0.70 -1.5 145,702 - PP_0137 0.70 +0.2 145,718 + PP_0137 0.72 -0.9 145,719 - PP_0137 0.72 -0.5 145,754 + PP_0137 0.74 -0.7 145,754 + PP_0137 0.74 +0.9 145,842 + PP_0137 0.81 +0.9 145,842 + PP_0137 0.81 -1.1 145,943 - PP_0137 0.88 -1.1 145,943 - PP_0137 0.88 +0.4 146,006 + -0.1 146,006 + -2.8 146,006 + +0.2 146,007 - -1.6 146,007 - +1.0 146,007 - -1.1 146,030 + -0.8 146,031 - -0.4 146,031 - +1.7 146,033 + -1.1 146,034 - -0.7 146,034 - +0.5 146,067 + -0.1 146,067 + -1.1 146,204 + +1.5 146,238 + -0.1 146,238 + +0.8 146,238 + -0.9 146,238 + -0.4 146,238 + -0.9 146,239 - +1.2 146,239 - +0.8 146,239 - +0.2 146,239 - +0.3 146,239 - +0.9 146,239 - +0.9 146,239 - +1.1 146,585 - PP_0138 0.28 -2.0 146,721 - PP_0138 0.39 -2.1 146,861 + PP_0138 0.50 +0.1 146,861 + PP_0138 0.50 -1.7 146,861 + PP_0138 0.50 +0.6 146,862 - PP_0138 0.50 +0.3 146,862 - +1.4 146,862 - PP_0138 0.50 +0.6 147,023 + PP_0138 0.63 +0.3 147,023 + PP_0138 0.63 -0.2 147,023 + PP_0138 0.63 +1.0 147,023 + PP_0138 0.63 +0.5 147,023 + PP_0138 0.63 +2.2 147,023 + PP_0138 0.63 +0.0 147,024 - PP_0138 0.63 -0.9 147,024 - PP_0138 0.63 +2.1 147,024 - PP_0138 0.63 +0.8 147,024 - PP_0138 0.63 +0.6 147,083 + PP_0138 0.68 -0.5 147,083 + PP_0138 0.68 +0.7
Or see this region's nucleotide sequence