Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4166 and PP_4167 are separated by 162 nucleotides PP_4167 and PP_4168 overlap by 4 nucleotides PP_4168 and PP_4169 are separated by 36 nucleotides
PP_4166: PP_4166 - conserved protein of unknown function, at 4,709,140 to 4,709,514
_4166
PP_4167: PP_4167 - Phosphohistidine phosphatase SixA, at 4,709,677 to 4,710,135
_4167
PP_4168: PP_4168 - conserved protein of unknown function, at 4,710,132 to 4,710,479
_4168
PP_4169: PP_4169 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 4,710,516 to 4,711,541
_4169
Position (kb) 4710
4711 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4709.193 kb on - strand, within PP_4166 at 4709.240 kb on + strand, within PP_4166 at 4709.240 kb on + strand, within PP_4166 at 4709.320 kb on - strand, within PP_4166 at 4709.397 kb on - strand, within PP_4166 at 4709.433 kb on - strand, within PP_4166 at 4709.455 kb on - strand, within PP_4166 at 4709.561 kb on + strand at 4709.619 kb on + strand at 4709.811 kb on + strand, within PP_4167 at 4709.812 kb on - strand, within PP_4167 at 4709.812 kb on - strand, within PP_4167 at 4709.815 kb on + strand, within PP_4167 at 4709.815 kb on + strand, within PP_4167 at 4709.815 kb on + strand, within PP_4167 at 4709.815 kb on + strand, within PP_4167 at 4709.816 kb on - strand, within PP_4167 at 4709.816 kb on - strand, within PP_4167 at 4709.816 kb on - strand, within PP_4167 at 4709.816 kb on - strand, within PP_4167 at 4709.980 kb on + strand, within PP_4167 at 4709.980 kb on + strand, within PP_4167 at 4709.981 kb on - strand, within PP_4167 at 4709.984 kb on + strand, within PP_4167 at 4709.985 kb on - strand, within PP_4167 at 4709.985 kb on - strand, within PP_4167 at 4709.985 kb on - strand, within PP_4167 at 4710.337 kb on + strand, within PP_4168 at 4710.338 kb on - strand, within PP_4168 at 4710.338 kb on - strand, within PP_4168 at 4710.360 kb on + strand, within PP_4168 at 4710.360 kb on + strand, within PP_4168 at 4710.361 kb on - strand, within PP_4168 at 4710.471 kb on - strand at 4710.536 kb on - strand at 4710.646 kb on + strand, within PP_4169 at 4710.646 kb on + strand, within PP_4169 at 4710.646 kb on + strand at 4710.647 kb on - strand, within PP_4169 at 4710.647 kb on - strand, within PP_4169
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 4,709,193 - PP_4166 0.14 +0.3 4,709,240 + PP_4166 0.27 -2.4 4,709,240 + PP_4166 0.27 -1.8 4,709,320 - PP_4166 0.48 +0.7 4,709,397 - PP_4166 0.69 -2.1 4,709,433 - PP_4166 0.78 -1.1 4,709,455 - PP_4166 0.84 +2.5 4,709,561 + -1.1 4,709,619 + -0.5 4,709,811 + PP_4167 0.29 +1.2 4,709,812 - PP_4167 0.29 +3.0 4,709,812 - PP_4167 0.29 -0.6 4,709,815 + PP_4167 0.30 -0.2 4,709,815 + PP_4167 0.30 +2.6 4,709,815 + PP_4167 0.30 -1.4 4,709,815 + PP_4167 0.30 +0.2 4,709,816 - PP_4167 0.30 -0.2 4,709,816 - PP_4167 0.30 +0.8 4,709,816 - PP_4167 0.30 +0.3 4,709,816 - PP_4167 0.30 -0.0 4,709,980 + PP_4167 0.66 +1.5 4,709,980 + PP_4167 0.66 +0.7 4,709,981 - PP_4167 0.66 -1.1 4,709,984 + PP_4167 0.67 -1.4 4,709,985 - PP_4167 0.67 +0.1 4,709,985 - PP_4167 0.67 -0.8 4,709,985 - PP_4167 0.67 -0.8 4,710,337 + PP_4168 0.59 +3.0 4,710,338 - PP_4168 0.59 +1.2 4,710,338 - PP_4168 0.59 +1.4 4,710,360 + PP_4168 0.66 -0.5 4,710,360 + PP_4168 0.66 +0.9 4,710,361 - PP_4168 0.66 +0.6 4,710,471 - -0.4 4,710,536 - -1.0 4,710,646 + PP_4169 0.13 +0.6 4,710,646 + PP_4169 0.13 -2.4 4,710,646 + -0.8 4,710,647 - PP_4169 0.13 -0.0 4,710,647 - PP_4169 0.13 +1.6
Or see this region's nucleotide sequence