Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0684 and PP_0685 are separated by 26 nucleotides PP_0685 and PP_0686 are separated by 84 nucleotides PP_0686 and PP_0687 are separated by 160 nucleotides
PP_0684: PP_0684 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 798,028 to 798,645
_0684
PP_0685: PP_0685 - conserved protein of unknown function, at 798,672 to 798,917
_0685
PP_0686: PP_0686 - conserved protein of unknown function, at 799,002 to 799,343
_0686
PP_0687: PP_0687 - octaprenyl diphosphate synthase, at 799,504 to 800,472
_0687
Position (kb) 799
800 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 798.070 kb on + strand at 798.070 kb on + strand at 798.070 kb on + strand at 798.399 kb on + strand, within PP_0684 at 798.400 kb on - strand, within PP_0684 at 798.407 kb on - strand at 798.448 kb on + strand at 798.448 kb on + strand, within PP_0684 at 798.547 kb on + strand, within PP_0684 at 798.547 kb on + strand, within PP_0684 at 798.547 kb on + strand, within PP_0684 at 798.547 kb on + strand, within PP_0684 at 798.547 kb on + strand, within PP_0684 at 798.548 kb on - strand, within PP_0684 at 798.548 kb on - strand, within PP_0684 at 798.548 kb on - strand, within PP_0684 at 798.548 kb on - strand, within PP_0684 at 798.548 kb on - strand, within PP_0684 at 798.548 kb on - strand, within PP_0684 at 798.569 kb on - strand, within PP_0684 at 798.643 kb on + strand at 798.644 kb on - strand at 798.644 kb on - strand at 798.713 kb on - strand, within PP_0685 at 798.713 kb on - strand, within PP_0685 at 798.874 kb on + strand, within PP_0685 at 798.910 kb on + strand at 798.910 kb on + strand at 798.911 kb on - strand at 798.911 kb on - strand at 798.921 kb on + strand at 798.921 kb on + strand at 798.922 kb on - strand at 798.922 kb on - strand at 798.922 kb on - strand at 799.297 kb on + strand, within PP_0686 at 799.297 kb on + strand, within PP_0686 at 799.297 kb on + strand, within PP_0686 at 799.297 kb on + strand, within PP_0686 at 799.297 kb on + strand, within PP_0686 at 799.297 kb on + strand, within PP_0686 at 799.297 kb on + strand, within PP_0686 at 799.297 kb on + strand, within PP_0686 at 799.297 kb on + strand, within PP_0686 at 799.297 kb on + strand, within PP_0686 at 799.298 kb on - strand, within PP_0686 at 799.298 kb on - strand, within PP_0686 at 799.298 kb on - strand, within PP_0686 at 799.298 kb on - strand, within PP_0686 at 799.298 kb on - strand, within PP_0686 at 799.298 kb on - strand, within PP_0686 at 799.298 kb on - strand, within PP_0686 at 799.298 kb on - strand, within PP_0686 at 799.298 kb on - strand, within PP_0686 at 799.298 kb on - strand, within PP_0686 at 799.303 kb on + strand, within PP_0686 at 799.303 kb on + strand, within PP_0686 at 799.303 kb on + strand, within PP_0686 at 799.304 kb on - strand, within PP_0686 at 799.304 kb on - strand, within PP_0686 at 799.304 kb on - strand, within PP_0686 at 799.304 kb on - strand, within PP_0686 at 799.374 kb on + strand at 799.374 kb on + strand at 799.389 kb on + strand at 799.390 kb on - strand at 799.390 kb on - strand at 799.396 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 798,070 + -0.7 798,070 + +1.3 798,070 + -0.9 798,399 + PP_0684 0.60 -0.3 798,400 - PP_0684 0.60 +1.6 798,407 - -0.8 798,448 + +1.6 798,448 + PP_0684 0.68 +0.2 798,547 + PP_0684 0.84 -1.7 798,547 + PP_0684 0.84 -0.8 798,547 + PP_0684 0.84 -0.8 798,547 + PP_0684 0.84 -0.5 798,547 + PP_0684 0.84 -1.5 798,548 - PP_0684 0.84 -0.4 798,548 - PP_0684 0.84 +0.0 798,548 - PP_0684 0.84 +0.4 798,548 - PP_0684 0.84 -0.1 798,548 - PP_0684 0.84 -0.8 798,548 - PP_0684 0.84 +2.2 798,569 - PP_0684 0.88 +1.2 798,643 + +1.1 798,644 - +1.2 798,644 - +0.6 798,713 - PP_0685 0.17 -1.8 798,713 - PP_0685 0.17 -1.0 798,874 + PP_0685 0.82 -0.8 798,910 + +0.4 798,910 + -2.3 798,911 - +0.4 798,911 - -0.8 798,921 + +1.0 798,921 + +1.2 798,922 - -0.3 798,922 - +1.2 798,922 - -0.4 799,297 + PP_0686 0.86 -0.5 799,297 + PP_0686 0.86 -1.0 799,297 + PP_0686 0.86 -0.0 799,297 + PP_0686 0.86 -0.6 799,297 + PP_0686 0.86 -0.7 799,297 + PP_0686 0.86 -1.5 799,297 + PP_0686 0.86 +2.8 799,297 + PP_0686 0.86 -0.3 799,297 + PP_0686 0.86 +0.9 799,297 + PP_0686 0.86 +0.0 799,298 - PP_0686 0.87 -0.1 799,298 - PP_0686 0.87 +2.1 799,298 - PP_0686 0.87 +3.1 799,298 - PP_0686 0.87 -0.1 799,298 - PP_0686 0.87 -0.3 799,298 - PP_0686 0.87 -1.0 799,298 - PP_0686 0.87 -0.1 799,298 - PP_0686 0.87 -0.8 799,298 - PP_0686 0.87 -0.6 799,298 - PP_0686 0.87 -2.0 799,303 + PP_0686 0.88 -0.9 799,303 + PP_0686 0.88 -1.1 799,303 + PP_0686 0.88 -0.8 799,304 - PP_0686 0.88 -1.0 799,304 - PP_0686 0.88 +0.9 799,304 - PP_0686 0.88 -0.1 799,304 - PP_0686 0.88 -0.0 799,374 + -0.3 799,374 + -2.4 799,389 + -0.4 799,390 - -0.2 799,390 - -0.9 799,396 + -1.1
Or see this region's nucleotide sequence