Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0658 and PP_0659 are separated by 167 nucleotides PP_0659 and PP_0660 are separated by 142 nucleotides
PP_0658: PP_0658 - Homocysteine S-methyltransferase family protein, at 765,406 to 766,341
_0658
PP_0659: PP_0659 - Cystathionine gamma-synthase, at 766,509 to 767,780
_0659
PP_0660: PP_0660 - S-methyl-L-methionine transporter, at 767,923 to 769,362
_0660
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.629 kb on + strand, within PP_0658 at 765.629 kb on + strand, within PP_0658 at 765.720 kb on + strand, within PP_0658 at 765.721 kb on - strand, within PP_0658 at 766.056 kb on + strand, within PP_0658 at 766.056 kb on + strand, within PP_0658 at 766.057 kb on - strand, within PP_0658 at 766.057 kb on - strand, within PP_0658 at 766.390 kb on - strand at 766.447 kb on + strand at 766.448 kb on - strand at 766.448 kb on - strand at 766.448 kb on - strand at 766.449 kb on + strand at 766.449 kb on + strand at 766.449 kb on + strand at 766.450 kb on - strand at 766.450 kb on - strand at 766.450 kb on - strand at 766.450 kb on - strand at 766.480 kb on + strand at 766.481 kb on - strand at 766.481 kb on - strand at 766.585 kb on + strand at 766.585 kb on + strand at 766.585 kb on + strand at 766.586 kb on - strand at 766.586 kb on - strand at 766.586 kb on - strand at 766.586 kb on - strand at 766.596 kb on + strand at 766.596 kb on + strand at 766.596 kb on + strand at 766.597 kb on - strand at 766.597 kb on - strand at 766.597 kb on - strand at 766.635 kb on + strand at 766.636 kb on - strand at 766.636 kb on - strand at 766.642 kb on - strand, within PP_0659 at 766.642 kb on - strand, within PP_0659 at 766.662 kb on + strand, within PP_0659 at 766.663 kb on - strand, within PP_0659 at 766.663 kb on - strand, within PP_0659 at 766.698 kb on + strand, within PP_0659 at 766.699 kb on - strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.864 kb on - strand, within PP_0659 at 766.864 kb on - strand, within PP_0659 at 766.864 kb on - strand, within PP_0659 at 766.932 kb on - strand, within PP_0659 at 766.986 kb on + strand, within PP_0659 at 766.986 kb on + strand, within PP_0659 at 766.987 kb on - strand, within PP_0659 at 767.291 kb on + strand, within PP_0659 at 767.291 kb on + strand, within PP_0659 at 767.353 kb on - strand, within PP_0659 at 767.353 kb on - strand, within PP_0659 at 767.353 kb on - strand, within PP_0659 at 767.388 kb on + strand, within PP_0659 at 767.517 kb on + strand, within PP_0659 at 767.517 kb on + strand, within PP_0659 at 767.517 kb on + strand, within PP_0659 at 767.517 kb on + strand, within PP_0659 at 767.518 kb on - strand, within PP_0659 at 767.518 kb on - strand, within PP_0659 at 767.518 kb on - strand, within PP_0659 at 767.559 kb on + strand, within PP_0659 at 767.559 kb on + strand, within PP_0659 at 767.559 kb on + strand, within PP_0659 at 767.559 kb on + strand, within PP_0659 at 767.559 kb on + strand, within PP_0659 at 767.559 kb on + strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.791 kb on + strand at 767.792 kb on - strand at 767.792 kb on - strand at 767.842 kb on + strand at 767.843 kb on - strand at 767.886 kb on + strand at 767.887 kb on - strand at 767.946 kb on + strand at 767.946 kb on + strand at 767.946 kb on + strand at 767.947 kb on - strand at 767.947 kb on - strand at 767.947 kb on - strand at 767.947 kb on - strand at 767.980 kb on - strand at 768.023 kb on + strand at 768.023 kb on + strand at 768.023 kb on + strand at 768.024 kb on - strand at 768.024 kb on - strand at 768.094 kb on + strand, within PP_0660 at 768.094 kb on + strand, within PP_0660 at 768.094 kb on + strand, within PP_0660 at 768.094 kb on + strand, within PP_0660 at 768.095 kb on - strand, within PP_0660 at 768.095 kb on - strand, within PP_0660 at 768.095 kb on - strand, within PP_0660 at 768.095 kb on - strand, within PP_0660 at 768.099 kb on - strand, within PP_0660 at 768.099 kb on - strand, within PP_0660 at 768.118 kb on + strand, within PP_0660 at 768.118 kb on + strand, within PP_0660 at 768.119 kb on - strand, within PP_0660 at 768.119 kb on - strand, within PP_0660 at 768.119 kb on - strand, within PP_0660 at 768.152 kb on + strand, within PP_0660 at 768.184 kb on + strand, within PP_0660 at 768.185 kb on - strand, within PP_0660 at 768.217 kb on + strand, within PP_0660 at 768.218 kb on - strand, within PP_0660 at 768.218 kb on - strand, within PP_0660 at 768.235 kb on + strand, within PP_0660 at 768.236 kb on - strand, within PP_0660 at 768.367 kb on - strand, within PP_0660 at 768.710 kb on + strand, within PP_0660
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 765,622 + PP_0658 0.23 -1.2 765,622 + PP_0658 0.23 -1.4 765,622 + PP_0658 0.23 +0.4 765,622 + PP_0658 0.23 -0.0 765,622 + PP_0658 0.23 -0.1 765,622 + PP_0658 0.23 -2.7 765,623 - PP_0658 0.23 -0.3 765,623 - PP_0658 0.23 -1.4 765,623 - PP_0658 0.23 -0.7 765,623 - PP_0658 0.23 -0.2 765,623 - PP_0658 0.23 +0.1 765,623 - PP_0658 0.23 -0.6 765,623 - PP_0658 0.23 +0.7 765,623 - PP_0658 0.23 +1.7 765,623 - PP_0658 0.23 -0.9 765,623 - PP_0658 0.23 -1.4 765,623 - PP_0658 0.23 +0.5 765,623 - PP_0658 0.23 +1.7 765,623 - PP_0658 0.23 -1.2 765,629 + PP_0658 0.24 +1.1 765,629 + PP_0658 0.24 +1.4 765,720 + PP_0658 0.34 +0.6 765,721 - PP_0658 0.34 -1.2 766,056 + PP_0658 0.69 -0.4 766,056 + PP_0658 0.69 -1.1 766,057 - PP_0658 0.70 +2.6 766,057 - PP_0658 0.70 +0.5 766,390 - -0.9 766,447 + -1.8 766,448 - +0.3 766,448 - +0.5 766,448 - -0.9 766,449 + -0.3 766,449 + +0.0 766,449 + -1.6 766,450 - -0.5 766,450 - +1.6 766,450 - +0.5 766,450 - +1.2 766,480 + -1.3 766,481 - -0.4 766,481 - -2.4 766,585 + +0.8 766,585 + +1.3 766,585 + +1.5 766,586 - +0.7 766,586 - -0.8 766,586 - +2.1 766,586 - -0.5 766,596 + +0.3 766,596 + +0.7 766,596 + +0.4 766,597 - -0.6 766,597 - -1.7 766,597 - +0.0 766,635 + -0.1 766,636 - +1.1 766,636 - +1.3 766,642 - PP_0659 0.10 +2.1 766,642 - PP_0659 0.10 -0.6 766,662 + PP_0659 0.12 -1.0 766,663 - PP_0659 0.12 -1.0 766,663 - PP_0659 0.12 -0.6 766,698 + PP_0659 0.15 -1.7 766,699 - PP_0659 0.15 -0.9 766,863 + PP_0659 0.28 -1.2 766,863 + PP_0659 0.28 -2.0 766,863 + PP_0659 0.28 +1.0 766,863 + PP_0659 0.28 +1.1 766,863 + PP_0659 0.28 +1.8 766,864 - PP_0659 0.28 -1.0 766,864 - PP_0659 0.28 +1.1 766,864 - PP_0659 0.28 +0.4 766,932 - PP_0659 0.33 -1.6 766,986 + PP_0659 0.38 -0.1 766,986 + PP_0659 0.38 +0.1 766,987 - PP_0659 0.38 -0.3 767,291 + PP_0659 0.61 -0.5 767,291 + PP_0659 0.61 -0.9 767,353 - PP_0659 0.66 +1.5 767,353 - PP_0659 0.66 -0.6 767,353 - PP_0659 0.66 -3.3 767,388 + PP_0659 0.69 -0.4 767,517 + PP_0659 0.79 +0.3 767,517 + PP_0659 0.79 -1.6 767,517 + PP_0659 0.79 -0.9 767,517 + PP_0659 0.79 -1.8 767,518 - PP_0659 0.79 -0.8 767,518 - PP_0659 0.79 -1.5 767,518 - PP_0659 0.79 -0.1 767,559 + PP_0659 0.83 -0.6 767,559 + PP_0659 0.83 -0.3 767,559 + PP_0659 0.83 -1.5 767,559 + PP_0659 0.83 -1.2 767,559 + PP_0659 0.83 -0.9 767,559 + PP_0659 0.83 -1.0 767,560 - PP_0659 0.83 -0.3 767,560 - PP_0659 0.83 +0.5 767,560 - PP_0659 0.83 -0.5 767,560 - PP_0659 0.83 -0.8 767,560 - PP_0659 0.83 +0.8 767,560 - PP_0659 0.83 +1.0 767,560 - PP_0659 0.83 -1.8 767,560 - PP_0659 0.83 +1.7 767,560 - PP_0659 0.83 +0.9 767,560 - PP_0659 0.83 -0.3 767,791 + +1.3 767,792 - +0.7 767,792 - -0.4 767,842 + -0.7 767,843 - +0.7 767,886 + -0.1 767,887 - -1.6 767,946 + -0.0 767,946 + +1.0 767,946 + +0.9 767,947 - +1.6 767,947 - +1.5 767,947 - +9.0 767,947 - -0.6 767,980 - +1.5 768,023 + -1.5 768,023 + -0.3 768,023 + -0.5 768,024 - +0.5 768,024 - +1.5 768,094 + PP_0660 0.12 +1.8 768,094 + PP_0660 0.12 +0.1 768,094 + PP_0660 0.12 -1.1 768,094 + PP_0660 0.12 +1.8 768,095 - PP_0660 0.12 -0.8 768,095 - PP_0660 0.12 -1.0 768,095 - PP_0660 0.12 -0.8 768,095 - PP_0660 0.12 -0.6 768,099 - PP_0660 0.12 -0.5 768,099 - PP_0660 0.12 -0.0 768,118 + PP_0660 0.14 -2.2 768,118 + PP_0660 0.14 +1.0 768,119 - PP_0660 0.14 -0.1 768,119 - PP_0660 0.14 -0.3 768,119 - PP_0660 0.14 -0.5 768,152 + PP_0660 0.16 +0.5 768,184 + PP_0660 0.18 +0.3 768,185 - PP_0660 0.18 -2.2 768,217 + PP_0660 0.20 -1.6 768,218 - PP_0660 0.20 -1.8 768,218 - PP_0660 0.20 +1.5 768,235 + PP_0660 0.22 -0.9 768,236 - PP_0660 0.22 +0.1 768,367 - PP_0660 0.31 -0.2 768,710 + PP_0660 0.55 +1.1
Or see this region's nucleotide sequence