Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0586 and PP_0587 are separated by 52 nucleotides PP_0587 and PP_0588 are separated by 145 nucleotides PP_0588 and PP_0589 are separated by 107 nucleotides
PP_0586: PP_0586 - cadmium translocating P-type ATPase, at 683,847 to 686,246
_0586
PP_0587: PP_0587 - conserved exported protein of unknown function, at 686,299 to 686,685
_0587
PP_0588: PP_0588 - putative copper-binding chaperone, at 686,831 to 687,028
_0588
PP_0589: PP_0589 - Bcr/CflA family multidrug resistance transporter, at 687,136 to 688,317
_0589
Position (kb) 686
687
688 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 685.849 kb on + strand, within PP_0586 at 686.016 kb on + strand at 686.133 kb on + strand at 686.134 kb on - strand at 686.227 kb on + strand at 686.227 kb on + strand at 686.227 kb on + strand at 686.227 kb on + strand at 686.228 kb on - strand at 686.228 kb on - strand at 686.228 kb on - strand at 686.303 kb on + strand at 686.336 kb on + strand at 686.336 kb on + strand at 686.358 kb on - strand, within PP_0587 at 686.410 kb on + strand, within PP_0587 at 686.410 kb on + strand, within PP_0587 at 686.411 kb on - strand, within PP_0587 at 686.411 kb on - strand, within PP_0587 at 686.411 kb on - strand, within PP_0587 at 686.412 kb on + strand at 686.412 kb on + strand, within PP_0587 at 686.412 kb on + strand, within PP_0587 at 686.412 kb on + strand, within PP_0587 at 686.412 kb on + strand, within PP_0587 at 686.412 kb on + strand, within PP_0587 at 686.413 kb on - strand, within PP_0587 at 686.538 kb on - strand, within PP_0587 at 686.593 kb on + strand, within PP_0587 at 686.600 kb on + strand, within PP_0587 at 686.601 kb on - strand, within PP_0587 at 686.601 kb on - strand, within PP_0587 at 686.824 kb on - strand at 686.824 kb on - strand at 686.847 kb on + strand at 686.847 kb on + strand at 686.847 kb on + strand at 686.848 kb on - strand at 687.009 kb on - strand at 687.098 kb on + strand at 687.117 kb on - strand at 687.125 kb on - strand at 687.202 kb on + strand at 687.202 kb on + strand at 687.202 kb on + strand at 687.203 kb on - strand at 687.278 kb on - strand at 687.278 kb on - strand, within PP_0589 at 687.294 kb on + strand, within PP_0589 at 687.311 kb on - strand, within PP_0589 at 687.363 kb on + strand, within PP_0589 at 687.397 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.694 kb on - strand, within PP_0589 at 687.808 kb on + strand, within PP_0589 at 687.808 kb on + strand, within PP_0589 at 687.811 kb on - strand, within PP_0589 at 687.844 kb on + strand, within PP_0589 at 687.866 kb on - strand at 687.883 kb on - strand, within PP_0589 at 687.900 kb on + strand, within PP_0589 at 687.980 kb on - strand, within PP_0589 at 687.980 kb on - strand, within PP_0589
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 685,849 + PP_0586 0.83 -1.4 686,016 + -2.1 686,133 + +0.2 686,134 - -0.2 686,227 + -0.4 686,227 + +0.9 686,227 + -2.0 686,227 + +1.2 686,228 - +0.5 686,228 - +1.6 686,228 - -0.5 686,303 + -0.0 686,336 + +4.4 686,336 + -1.9 686,358 - PP_0587 0.15 -0.2 686,410 + PP_0587 0.29 +0.8 686,410 + PP_0587 0.29 +0.4 686,411 - PP_0587 0.29 -0.5 686,411 - PP_0587 0.29 -0.5 686,411 - PP_0587 0.29 -0.8 686,412 + -1.7 686,412 + PP_0587 0.29 -2.2 686,412 + PP_0587 0.29 -0.1 686,412 + PP_0587 0.29 -1.2 686,412 + PP_0587 0.29 +0.4 686,412 + PP_0587 0.29 -0.1 686,413 - PP_0587 0.29 -0.4 686,538 - PP_0587 0.62 +0.1 686,593 + PP_0587 0.76 +1.6 686,600 + PP_0587 0.78 -1.2 686,601 - PP_0587 0.78 +1.4 686,601 - PP_0587 0.78 -2.3 686,824 - +2.2 686,824 - +1.0 686,847 + -0.0 686,847 + +0.8 686,847 + -0.3 686,848 - +2.5 687,009 - +0.7 687,098 + -2.1 687,117 - -0.5 687,125 - -2.4 687,202 + +0.3 687,202 + +0.2 687,202 + +1.9 687,203 - +1.3 687,278 - +0.6 687,278 - PP_0589 0.12 -0.4 687,294 + PP_0589 0.13 -0.2 687,311 - PP_0589 0.15 +1.6 687,363 + PP_0589 0.19 +0.3 687,397 + PP_0589 0.22 +0.5 687,693 + PP_0589 0.47 +1.1 687,693 + PP_0589 0.47 +0.6 687,693 + PP_0589 0.47 -0.0 687,693 + PP_0589 0.47 -0.9 687,693 + PP_0589 0.47 +0.8 687,693 + PP_0589 0.47 -1.3 687,694 - PP_0589 0.47 +0.2 687,808 + PP_0589 0.57 +1.6 687,808 + PP_0589 0.57 -0.0 687,811 - PP_0589 0.57 +0.2 687,844 + PP_0589 0.60 -0.4 687,866 - -0.8 687,883 - PP_0589 0.63 +1.0 687,900 + PP_0589 0.65 +0.5 687,980 - PP_0589 0.71 +0.8 687,980 - PP_0589 0.71 +1.3
Or see this region's nucleotide sequence