Strain Fitness in Pseudomonas putida KT2440 around PP_0268

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0267 and PP_0268 are separated by 474 nucleotidesPP_0268 and PP_0269 are separated by 30 nucleotides PP_0267: PP_0267 - putative Outer membrane ferric siderophore receptor, at 322,171 to 324,240 _0267 PP_0268: PP_0268 - outer-membrane porin D, at 324,715 to 326,034 _0268 PP_0269: PP_0269 - putative Glutamate synthase, large subunit, at 326,065 to 327,732 _0269 Position (kb) 324 325 326 327Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 323.798 kb on + strand, within PP_0267at 323.799 kb on - strand, within PP_0267at 323.799 kb on - strand, within PP_0267at 323.861 kb on + strand, within PP_0267at 323.861 kb on + strand, within PP_0267at 323.861 kb on + strand, within PP_0267at 323.861 kb on + strand, within PP_0267at 323.862 kb on - strand, within PP_0267at 323.862 kb on - strand, within PP_0267at 323.891 kb on + strand, within PP_0267at 323.891 kb on + strand, within PP_0267at 323.891 kb on + strand, within PP_0267at 323.892 kb on - strand, within PP_0267at 323.892 kb on - strand, within PP_0267at 323.926 kb on + strand, within PP_0267at 323.926 kb on + strand, within PP_0267at 323.927 kb on - strand, within PP_0267at 323.927 kb on - strand, within PP_0267at 324.006 kb on - strand, within PP_0267at 324.053 kb on + strandat 324.054 kb on - strandat 324.054 kb on - strandat 324.233 kb on - strandat 324.312 kb on - strandat 324.317 kb on + strandat 324.332 kb on - strandat 324.335 kb on + strandat 324.336 kb on - strandat 324.336 kb on - strandat 324.350 kb on - strandat 324.427 kb on - strandat 324.427 kb on - strandat 324.427 kb on - strandat 324.459 kb on - strandat 324.491 kb on + strandat 324.492 kb on - strandat 324.492 kb on - strandat 324.525 kb on + strandat 324.570 kb on - strandat 324.570 kb on - strandat 324.570 kb on - strandat 324.635 kb on + strandat 324.635 kb on + strandat 324.647 kb on + strandat 324.647 kb on + strandat 324.676 kb on - strandat 324.696 kb on - strandat 324.702 kb on + strandat 324.703 kb on - strandat 324.844 kb on + strandat 324.845 kb on - strandat 324.953 kb on + strand, within PP_0268at 324.953 kb on + strand, within PP_0268at 324.970 kb on + strand, within PP_0268at 324.971 kb on - strand, within PP_0268at 324.971 kb on - strand, within PP_0268at 325.135 kb on + strand, within PP_0268at 325.136 kb on - strand, within PP_0268at 325.328 kb on + strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.340 kb on - strand, within PP_0268at 325.408 kb on + strand, within PP_0268at 325.409 kb on - strand, within PP_0268at 325.409 kb on - strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.424 kb on - strand, within PP_0268at 325.424 kb on - strand, within PP_0268at 325.498 kb on + strand, within PP_0268at 325.498 kb on + strand, within PP_0268at 325.498 kb on + strand, within PP_0268at 325.498 kb on + strand, within PP_0268at 325.499 kb on - strand, within PP_0268at 325.499 kb on - strand, within PP_0268at 325.502 kb on + strand, within PP_0268at 325.558 kb on + strand, within PP_0268at 325.558 kb on + strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.565 kb on - strand, within PP_0268at 325.618 kb on + strand, within PP_0268at 325.619 kb on - strand, within PP_0268at 325.624 kb on + strand, within PP_0268at 325.624 kb on + strand, within PP_0268at 325.624 kb on + strand, within PP_0268at 325.624 kb on + strand, within PP_0268at 325.625 kb on - strand, within PP_0268at 325.625 kb on - strand, within PP_0268at 325.634 kb on - strand, within PP_0268at 325.676 kb on - strand, within PP_0268at 325.690 kb on + strand, within PP_0268at 325.691 kb on - strand, within PP_0268at 325.759 kb on + strand, within PP_0268at 325.760 kb on - strand, within PP_0268at 325.780 kb on + strand, within PP_0268at 325.781 kb on - strand, within PP_0268at 325.781 kb on - strand, within PP_0268at 325.781 kb on - strand, within PP_0268at 325.792 kb on + strand, within PP_0268at 325.792 kb on + strand, within PP_0268at 325.792 kb on + strand, within PP_0268at 325.792 kb on + strand, within PP_0268at 325.793 kb on - strand, within PP_0268at 325.932 kb on + strandat 325.932 kb on + strandat 325.932 kb on + strandat 325.932 kb on + strandat 325.932 kb on + strandat 325.932 kb on + strandat 325.933 kb on - strandat 325.975 kb on + strandat 326.048 kb on + strandat 326.049 kb on - strandat 326.066 kb on + strandat 326.067 kb on - strandat 326.122 kb on + strandat 326.123 kb on - strandat 326.174 kb on + strandat 326.203 kb on + strandat 326.204 kb on - strandat 326.472 kb on + strand, within PP_0269at 326.473 kb on - strand, within PP_0269at 326.533 kb on + strand, within PP_0269at 326.533 kb on + strand, within PP_0269

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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323,798 + PP_0267 0.79 -0.7
323,799 - PP_0267 0.79 -1.8
323,799 - PP_0267 0.79 -0.6
323,861 + PP_0267 0.82 +0.6
323,861 + PP_0267 0.82 +1.8
323,861 + PP_0267 0.82 +1.5
323,861 + PP_0267 0.82 +1.1
323,862 - PP_0267 0.82 -1.2
323,862 - PP_0267 0.82 -1.0
323,891 + PP_0267 0.83 +0.6
323,891 + PP_0267 0.83 +2.1
323,891 + PP_0267 0.83 +1.2
323,892 - PP_0267 0.83 +0.2
323,892 - PP_0267 0.83 -1.8
323,926 + PP_0267 0.85 +0.4
323,926 + PP_0267 0.85 -0.7
323,927 - PP_0267 0.85 +2.6
323,927 - PP_0267 0.85 -0.8
324,006 - PP_0267 0.89 +0.7
324,053 + +0.1
324,054 - -1.2
324,054 - +0.1
324,233 - +2.9
324,312 - -1.4
324,317 + -0.4
324,332 - -2.5
324,335 + +1.8
324,336 - -0.2
324,336 - -1.5
324,350 - +1.1
324,427 - +1.0
324,427 - -0.1
324,427 - -0.4
324,459 - -0.9
324,491 + +0.9
324,492 - +1.8
324,492 - -1.6
324,525 + +0.9
324,570 - +1.2
324,570 - -0.6
324,570 - +0.8
324,635 + -0.3
324,635 + +0.8
324,647 + +0.3
324,647 + +1.4
324,676 - +0.3
324,696 - +0.2
324,702 + +1.0
324,703 - -0.6
324,844 + -2.9
324,845 - +0.4
324,953 + PP_0268 0.18 +0.8
324,953 + PP_0268 0.18 +0.9
324,970 + PP_0268 0.19 +0.3
324,971 - PP_0268 0.19 +1.2
324,971 - PP_0268 0.19 -1.0
325,135 + PP_0268 0.32 +1.0
325,136 - PP_0268 0.32 -0.5
325,328 + PP_0268 0.46 -1.0
325,329 - PP_0268 0.47 +0.4
325,329 - PP_0268 0.47 +1.0
325,329 - PP_0268 0.47 -1.8
325,329 - PP_0268 0.47 +0.4
325,329 - PP_0268 0.47 -0.6
325,340 - PP_0268 0.47 -0.0
325,408 + PP_0268 0.53 +0.2
325,409 - PP_0268 0.53 +0.6
325,409 - PP_0268 0.53 +1.3
325,423 + PP_0268 0.54 -0.3
325,423 + PP_0268 0.54 +0.0
325,423 + PP_0268 0.54 +3.2
325,423 + PP_0268 0.54 -0.4
325,423 + PP_0268 0.54 -1.4
325,424 - PP_0268 0.54 +1.9
325,424 - PP_0268 0.54 +0.5
325,498 + PP_0268 0.59 -0.2
325,498 + PP_0268 0.59 +0.3
325,498 + PP_0268 0.59 -1.2
325,498 + PP_0268 0.59 +0.9
325,499 - PP_0268 0.59 -2.0
325,499 - PP_0268 0.59 -1.2
325,502 + PP_0268 0.60 +1.6
325,558 + PP_0268 0.64 -0.4
325,558 + PP_0268 0.64 -1.3
325,559 - PP_0268 0.64 +1.2
325,559 - PP_0268 0.64 +3.1
325,559 - PP_0268 0.64 +0.2
325,559 - PP_0268 0.64 +0.1
325,559 - PP_0268 0.64 -0.2
325,559 - PP_0268 0.64 -0.1
325,565 - PP_0268 0.64 +0.4
325,618 + PP_0268 0.68 +0.3
325,619 - PP_0268 0.68 +2.1
325,624 + PP_0268 0.69 -1.4
325,624 + PP_0268 0.69 +0.8
325,624 + PP_0268 0.69 -0.9
325,624 + PP_0268 0.69 +1.6
325,625 - PP_0268 0.69 -0.2
325,625 - PP_0268 0.69 -2.7
325,634 - PP_0268 0.70 +1.0
325,676 - PP_0268 0.73 +0.6
325,690 + PP_0268 0.74 -1.2
325,691 - PP_0268 0.74 +0.8
325,759 + PP_0268 0.79 -1.2
325,760 - PP_0268 0.79 +0.3
325,780 + PP_0268 0.81 +1.5
325,781 - PP_0268 0.81 +0.7
325,781 - PP_0268 0.81 -0.7
325,781 - PP_0268 0.81 -0.9
325,792 + PP_0268 0.82 +0.4
325,792 + PP_0268 0.82 -0.5
325,792 + PP_0268 0.82 -0.2
325,792 + PP_0268 0.82 -0.5
325,793 - PP_0268 0.82 +0.3
325,932 + +1.6
325,932 + -1.5
325,932 + -0.5
325,932 + -0.8
325,932 + +0.1
325,932 + +1.0
325,933 - -0.2
325,975 + -2.0
326,048 + -1.4
326,049 - -0.2
326,066 + +0.1
326,067 - +1.6
326,122 + +0.9
326,123 - -1.0
326,174 + +0.6
326,203 + -1.8
326,204 - -1.1
326,472 + PP_0269 0.24 +1.0
326,473 - PP_0269 0.24 -0.4
326,533 + PP_0269 0.28 -1.2
326,533 + PP_0269 0.28 +2.2

Or see this region's nucleotide sequence