Strain Fitness in Escherichia coli BW25113 around b4620

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjbH and yjbT are separated by 46 nucleotidesyjbT and yjbA are separated by 269 nucleotidesyjbA and xylE are separated by 43 nucleotides b4029: yjbH - predicted porin (NCBI), at 4,235,657 to 4,237,753 yjbH b4620: yjbT - hypothetical protein, no homologs (RefSeq), at 4,237,800 to 4,238,078 yjbT b4030: yjbA - phosphate-starvation-inducible protein PsiE (NCBI), at 4,238,348 to 4,238,758 yjbA b4031: xylE - D-xylose transporter (NCBI), at 4,238,802 to 4,240,277 xylE Position (kb) 4237 4238 4239Strain fitness (log2 ratio) -1 0 1at 4236.906 kb on - strand, within yjbHat 4236.944 kb on + strand, within yjbHat 4236.944 kb on + strand, within yjbHat 4236.992 kb on - strand, within yjbHat 4236.992 kb on - strand, within yjbHat 4237.034 kb on + strand, within yjbHat 4237.113 kb on + strand, within yjbHat 4237.200 kb on - strand, within yjbHat 4237.233 kb on - strand, within yjbHat 4237.282 kb on - strand, within yjbHat 4237.326 kb on + strand, within yjbHat 4237.326 kb on + strand, within yjbHat 4237.406 kb on + strand, within yjbHat 4237.440 kb on - strand, within yjbHat 4237.472 kb on - strand, within yjbHat 4237.488 kb on + strand, within yjbHat 4237.526 kb on - strand, within yjbHat 4237.533 kb on + strand, within yjbHat 4237.578 kb on - strandat 4237.578 kb on - strandat 4237.580 kb on - strandat 4237.667 kb on + strandat 4237.667 kb on + strandat 4237.781 kb on + strandat 4237.907 kb on - strand, within yjbTat 4237.911 kb on + strand, within yjbTat 4237.911 kb on + strand, within yjbTat 4237.931 kb on + strand, within yjbTat 4237.931 kb on + strand, within yjbTat 4237.950 kb on + strand, within yjbTat 4237.963 kb on - strand, within yjbTat 4238.017 kb on + strand, within yjbTat 4238.017 kb on + strand, within yjbTat 4238.320 kb on - strandat 4238.331 kb on + strandat 4238.331 kb on + strandat 4238.335 kb on + strandat 4238.360 kb on + strandat 4238.419 kb on + strand, within yjbAat 4238.419 kb on + strand, within yjbAat 4238.526 kb on - strand, within yjbAat 4238.600 kb on + strand, within yjbAat 4238.631 kb on + strand, within yjbAat 4238.631 kb on + strand, within yjbAat 4238.686 kb on + strand, within yjbAat 4238.686 kb on + strand, within yjbAat 4238.718 kb on + strandat 4238.786 kb on + strandat 4238.786 kb on + strandat 4238.794 kb on - strandat 4238.807 kb on + strandat 4239.030 kb on + strand, within xylE

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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4,236,906 - yjbH b4029 0.60 -0.0
4,236,944 + yjbH b4029 0.61 -0.3
4,236,944 + yjbH b4029 0.61 +0.7
4,236,992 - yjbH b4029 0.64 +0.4
4,236,992 - yjbH b4029 0.64 -0.0
4,237,034 + yjbH b4029 0.66 +0.0
4,237,113 + yjbH b4029 0.69 -0.0
4,237,200 - yjbH b4029 0.74 -0.3
4,237,233 - yjbH b4029 0.75 -0.1
4,237,282 - yjbH b4029 0.77 -0.9
4,237,326 + yjbH b4029 0.80 -0.1
4,237,326 + yjbH b4029 0.80 +0.2
4,237,406 + yjbH b4029 0.83 -0.5
4,237,440 - yjbH b4029 0.85 +1.0
4,237,472 - yjbH b4029 0.87 -0.2
4,237,488 + yjbH b4029 0.87 +0.3
4,237,526 - yjbH b4029 0.89 +1.0
4,237,533 + yjbH b4029 0.89 +0.3
4,237,578 - -0.1
4,237,578 - -0.2
4,237,580 - -0.5
4,237,667 + +0.3
4,237,667 + -0.6
4,237,781 + -0.3
4,237,907 - yjbT b4620 0.38 +0.5
4,237,911 + yjbT b4620 0.40 +0.6
4,237,911 + yjbT b4620 0.40 +0.0
4,237,931 + yjbT b4620 0.47 +0.5
4,237,931 + yjbT b4620 0.47 +1.0
4,237,950 + yjbT b4620 0.54 -0.5
4,237,963 - yjbT b4620 0.58 +0.0
4,238,017 + yjbT b4620 0.78 +0.9
4,238,017 + yjbT b4620 0.78 +0.3
4,238,320 - +0.4
4,238,331 + -0.6
4,238,331 + -0.1
4,238,335 + -0.0
4,238,360 + +0.2
4,238,419 + yjbA b4030 0.17 -0.4
4,238,419 + yjbA b4030 0.17 +0.1
4,238,526 - yjbA b4030 0.43 -0.1
4,238,600 + yjbA b4030 0.61 +0.3
4,238,631 + yjbA b4030 0.69 +0.2
4,238,631 + yjbA b4030 0.69 +0.1
4,238,686 + yjbA b4030 0.82 +1.0
4,238,686 + yjbA b4030 0.82 -0.3
4,238,718 + -1.0
4,238,786 + +0.3
4,238,786 + +0.6
4,238,794 - +0.1
4,238,807 + +0.3
4,239,030 + xylE b4031 0.15 +0.7

Or see this region's nucleotide sequence