Strain Fitness in Escherichia coli BW25113 around b3889

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyiiD and yiiE are separated by 858 nucleotidesyiiE and yiiF are separated by 241 nucleotidesyiiF and fdhE are separated by 329 nucleotides b3888: yiiD - predicted acetyltransferase (NCBI), at 4,075,472 to 4,076,461 yiiD b3889: yiiE - predicted transcriptional regulator (RefSeq), at 4,077,320 to 4,077,532 yiiE b3890: yiiF - orf, hypothetical protein (VIMSS), at 4,077,774 to 4,077,992 yiiF b3891: fdhE - formate dehydrogenase accessory protein FdhE (NCBI), at 4,078,322 to 4,079,251 fdhE Position (kb) 4077 4078Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4076.353 kb on - strand, within yiiDat 4076.363 kb on + strandat 4076.363 kb on + strandat 4076.378 kb on + strandat 4076.384 kb on + strandat 4076.384 kb on + strandat 4076.386 kb on + strandat 4076.395 kb on + strandat 4076.395 kb on + strandat 4076.404 kb on - strandat 4076.430 kb on + strandat 4076.430 kb on + strandat 4076.430 kb on + strandat 4076.430 kb on + strandat 4076.430 kb on + strandat 4076.430 kb on + strandat 4076.432 kb on + strandat 4076.432 kb on + strandat 4076.432 kb on + strandat 4076.438 kb on - strandat 4076.440 kb on + strandat 4076.440 kb on + strandat 4076.441 kb on + strandat 4076.448 kb on - strandat 4076.448 kb on - strandat 4076.451 kb on + strandat 4076.451 kb on + strandat 4076.451 kb on + strandat 4076.453 kb on + strandat 4076.456 kb on + strandat 4076.461 kb on + strandat 4076.462 kb on + strandat 4076.462 kb on + strandat 4076.462 kb on + strandat 4076.462 kb on + strandat 4076.464 kb on + strandat 4076.464 kb on + strandat 4076.464 kb on + strandat 4076.464 kb on + strandat 4076.468 kb on + strandat 4076.468 kb on + strandat 4076.468 kb on + strandat 4076.470 kb on - strandat 4076.473 kb on + strandat 4076.473 kb on + strandat 4076.473 kb on + strandat 4076.478 kb on + strandat 4076.478 kb on + strandat 4076.478 kb on + strandat 4076.487 kb on + strandat 4076.487 kb on + strandat 4076.491 kb on + strandat 4076.491 kb on + strandat 4076.491 kb on + strandat 4076.506 kb on + strandat 4076.563 kb on + strandat 4076.563 kb on + strandat 4076.564 kb on + strandat 4076.564 kb on + strandat 4076.568 kb on + strandat 4076.568 kb on + strandat 4076.570 kb on + strandat 4076.570 kb on + strandat 4076.570 kb on + strandat 4076.575 kb on + strandat 4076.581 kb on - strandat 4076.582 kb on - strandat 4076.583 kb on + strandat 4076.583 kb on + strandat 4076.586 kb on + strandat 4076.586 kb on + strandat 4076.586 kb on + strandat 4076.592 kb on - strandat 4076.596 kb on + strandat 4076.596 kb on + strandat 4076.678 kb on - strandat 4076.678 kb on - strandat 4076.685 kb on + strandat 4076.794 kb on - strandat 4076.975 kb on + strandat 4076.978 kb on + strandat 4077.045 kb on - strandat 4077.365 kb on - strand, within yiiEat 4077.422 kb on + strand, within yiiEat 4077.422 kb on + strand, within yiiEat 4077.422 kb on + strand, within yiiEat 4077.422 kb on + strand, within yiiEat 4077.422 kb on + strand, within yiiEat 4077.448 kb on + strand, within yiiEat 4077.448 kb on + strand, within yiiEat 4077.490 kb on + strand, within yiiEat 4077.490 kb on + strand, within yiiEat 4077.490 kb on + strand, within yiiEat 4077.490 kb on + strand, within yiiEat 4077.490 kb on + strand, within yiiEat 4077.501 kb on + strand, within yiiEat 4077.503 kb on + strand, within yiiEat 4077.511 kb on + strandat 4077.511 kb on + strandat 4077.511 kb on + strandat 4077.511 kb on + strandat 4077.511 kb on + strandat 4077.511 kb on + strandat 4077.511 kb on + strandat 4077.511 kb on + strandat 4077.511 kb on + strandat 4077.511 kb on + strandat 4077.511 kb on + strandat 4077.511 kb on + strandat 4077.513 kb on + strandat 4077.515 kb on + strandat 4077.515 kb on + strandat 4077.520 kb on + strandat 4077.634 kb on - strandat 4077.634 kb on - strandat 4077.710 kb on - strandat 4077.757 kb on + strandat 4077.765 kb on - strandat 4077.765 kb on - strandat 4077.766 kb on + strandat 4077.766 kb on + strandat 4077.774 kb on - strandat 4077.774 kb on - strandat 4077.779 kb on - strandat 4077.826 kb on + strand, within yiiFat 4077.827 kb on - strand, within yiiFat 4077.834 kb on - strand, within yiiFat 4077.834 kb on - strand, within yiiFat 4077.842 kb on - strand, within yiiFat 4077.842 kb on - strand, within yiiFat 4077.868 kb on - strand, within yiiFat 4077.871 kb on - strand, within yiiFat 4077.922 kb on + strand, within yiiFat 4077.943 kb on + strand, within yiiFat 4077.982 kb on + strandat 4077.982 kb on + strandat 4077.992 kb on - strandat 4077.992 kb on - strandat 4077.992 kb on - strandat 4078.150 kb on - strandat 4078.182 kb on - strandat 4078.182 kb on - strandat 4078.202 kb on - strandat 4078.227 kb on + strandat 4078.227 kb on + strandat 4078.228 kb on + strandat 4078.228 kb on + strandat 4078.228 kb on + strandat 4078.262 kb on + strandat 4078.262 kb on + strandat 4078.264 kb on + strandat 4078.264 kb on + strandat 4078.271 kb on + strandat 4078.277 kb on - strandat 4078.280 kb on - strandat 4078.294 kb on - strandat 4078.294 kb on - strandat 4078.371 kb on + strandat 4078.521 kb on - strand, within fdhEat 4078.521 kb on - strand, within fdhEat 4078.532 kb on + strand, within fdhEat 4078.532 kb on + strand, within fdhE

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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4,076,353 - yiiD b3888 0.89 -0.0
4,076,363 + -0.8
4,076,363 + +0.5
4,076,378 + -0.2
4,076,384 + +0.6
4,076,384 + -0.0
4,076,386 + +0.8
4,076,395 + -0.0
4,076,395 + +0.0
4,076,404 - -0.6
4,076,430 + +0.4
4,076,430 + +0.3
4,076,430 + +0.2
4,076,430 + -0.1
4,076,430 + +0.2
4,076,430 + +0.1
4,076,432 + -0.2
4,076,432 + +0.7
4,076,432 + -0.0
4,076,438 - +0.4
4,076,440 + -0.0
4,076,440 + -0.5
4,076,441 + -0.4
4,076,448 - +0.8
4,076,448 - +0.8
4,076,451 + +0.0
4,076,451 + -0.8
4,076,451 + +0.1
4,076,453 + -0.4
4,076,456 + +0.9
4,076,461 + -0.3
4,076,462 + -0.1
4,076,462 + +0.1
4,076,462 + -0.3
4,076,462 + +0.6
4,076,464 + +0.1
4,076,464 + +0.4
4,076,464 + +0.7
4,076,464 + +0.0
4,076,468 + +0.1
4,076,468 + -1.0
4,076,468 + -0.4
4,076,470 - +0.8
4,076,473 + +0.9
4,076,473 + +0.5
4,076,473 + +0.3
4,076,478 + -0.0
4,076,478 + -0.8
4,076,478 + +1.1
4,076,487 + +0.4
4,076,487 + +1.0
4,076,491 + +0.4
4,076,491 + +0.9
4,076,491 + +0.6
4,076,506 + -0.6
4,076,563 + +0.2
4,076,563 + +0.4
4,076,564 + +2.8
4,076,564 + -0.8
4,076,568 + +0.5
4,076,568 + -0.2
4,076,570 + +1.8
4,076,570 + +1.8
4,076,570 + +0.8
4,076,575 + +0.8
4,076,581 - +1.8
4,076,582 - +1.8
4,076,583 + +2.2
4,076,583 + -0.8
4,076,586 + +1.5
4,076,586 + +1.8
4,076,586 + +1.2
4,076,592 - +1.8
4,076,596 + +1.0
4,076,596 + +1.6
4,076,678 - +1.8
4,076,678 - -0.5
4,076,685 + -0.5
4,076,794 - +1.8
4,076,975 + +1.8
4,076,978 + +0.8
4,077,045 - +1.8
4,077,365 - yiiE b3889 0.21 +1.8
4,077,422 + yiiE b3889 0.48 +0.2
4,077,422 + yiiE b3889 0.48 +1.8
4,077,422 + yiiE b3889 0.48 +0.5
4,077,422 + yiiE b3889 0.48 +1.8
4,077,422 + yiiE b3889 0.48 +1.8
4,077,448 + yiiE b3889 0.60 +1.8
4,077,448 + yiiE b3889 0.60 -0.2
4,077,490 + yiiE b3889 0.80 +2.3
4,077,490 + yiiE b3889 0.80 +0.8
4,077,490 + yiiE b3889 0.80 +2.8
4,077,490 + yiiE b3889 0.80 +0.1
4,077,490 + yiiE b3889 0.80 +1.2
4,077,501 + yiiE b3889 0.85 +1.1
4,077,503 + yiiE b3889 0.86 -0.0
4,077,511 + +0.3
4,077,511 + +0.2
4,077,511 + -0.2
4,077,511 + -1.4
4,077,511 + +2.4
4,077,511 + +0.4
4,077,511 + -1.8
4,077,511 + +1.8
4,077,511 + +0.2
4,077,511 + +0.1
4,077,511 + +1.6
4,077,511 + +3.8
4,077,513 + +0.2
4,077,515 + -0.3
4,077,515 + +0.5
4,077,520 + +2.4
4,077,634 - +0.2
4,077,634 - -1.0
4,077,710 - +0.6
4,077,757 + +0.1
4,077,765 - +1.1
4,077,765 - +0.6
4,077,766 + +1.8
4,077,766 + +1.8
4,077,774 - +0.7
4,077,774 - +0.2
4,077,779 - +0.7
4,077,826 + yiiF b3890 0.24 -0.5
4,077,827 - yiiF b3890 0.24 +0.5
4,077,834 - yiiF b3890 0.27 +0.7
4,077,834 - yiiF b3890 0.27 -0.4
4,077,842 - yiiF b3890 0.31 +2.0
4,077,842 - yiiF b3890 0.31 +0.6
4,077,868 - yiiF b3890 0.43 -0.3
4,077,871 - yiiF b3890 0.44 +0.8
4,077,922 + yiiF b3890 0.68 -0.1
4,077,943 + yiiF b3890 0.77 -0.7
4,077,982 + +1.7
4,077,982 + +0.3
4,077,992 - -0.0
4,077,992 - +0.4
4,077,992 - +0.7
4,078,150 - +0.4
4,078,182 - -0.3
4,078,182 - +1.0
4,078,202 - -0.2
4,078,227 + +0.8
4,078,227 + -0.4
4,078,228 + +0.6
4,078,228 + +0.5
4,078,228 + -0.0
4,078,262 + +0.5
4,078,262 + +0.1
4,078,264 + +0.3
4,078,264 + -0.0
4,078,271 + +0.9
4,078,277 - -0.2
4,078,280 - +0.1
4,078,294 - -0.5
4,078,294 - -0.8
4,078,371 + -0.8
4,078,521 - fdhE b3891 0.21 +0.1
4,078,521 - fdhE b3891 0.21 -0.6
4,078,532 + fdhE b3891 0.23 -0.2
4,078,532 + fdhE b3891 0.23 +0.3

Or see this region's nucleotide sequence