Strain Fitness in Escherichia coli BW25113 around b1794

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaN and yeaO are separated by 54 nucleotidesyeaO and yoaF are separated by 21 nucleotidesyoaF and yeaP are separated by 182 nucleotidesyeaP and yoaK are separated by 32 nucleotidesyoaK and yoaJ are separated by 2 nucleotidesyoaJ and yeaQ are separated by 58 nucleotidesyeaQ and yoaG are separated by 147 nucleotidesyoaG and yeaR are separated by 3 nucleotides b1791: yeaN - predicted transporter (NCBI), at 1,873,697 to 1,874,878 yeaN b1792: yeaO - orf, hypothetical protein (VIMSS), at 1,874,933 to 1,875,280 yeaO b1793: yoaF - conserved outer membrane protein (NCBI), at 1,875,302 to 1,875,556 yoaF b1794: yeaP - orf, hypothetical protein (VIMSS), at 1,875,739 to 1,876,764 yeaP b4676: yoaK - expressed protein (RefSeq), at 1,876,797 to 1,876,895 yoaK b4675: yoaJ - expressed protein (RefSeq), at 1,876,898 to 1,876,972 yoaJ b1795: yeaQ - conserved inner membrane protein (NCBI), at 1,877,031 to 1,877,279 yeaQ b1796: yoaG - hypothetical protein (NCBI), at 1,877,427 to 1,877,609 yoaG b1797: yeaR - hypothetical protein (NCBI), at 1,877,613 to 1,877,972 yeaR Position (kb) 1875 1876 1877Strain fitness (log2 ratio) -1 0 1 2at 1874.783 kb on + strandat 1875.211 kb on + strand, within yeaOat 1875.211 kb on + strand, within yeaOat 1875.211 kb on + strand, within yeaOat 1875.241 kb on - strand, within yeaOat 1875.241 kb on - strand, within yeaOat 1875.291 kb on + strandat 1875.416 kb on - strand, within yoaFat 1875.530 kb on + strand, within yoaFat 1875.571 kb on + strandat 1875.582 kb on + strandat 1875.724 kb on + strandat 1875.848 kb on - strand, within yeaPat 1876.009 kb on + strand, within yeaPat 1876.093 kb on + strand, within yeaPat 1876.241 kb on - strand, within yeaPat 1876.257 kb on + strand, within yeaPat 1876.257 kb on + strand, within yeaPat 1876.257 kb on + strand, within yeaPat 1876.257 kb on + strand, within yeaPat 1876.257 kb on + strand, within yeaPat 1876.347 kb on + strand, within yeaPat 1876.361 kb on - strand, within yeaPat 1876.377 kb on + strand, within yeaPat 1876.377 kb on + strand, within yeaPat 1876.421 kb on - strand, within yeaPat 1876.421 kb on - strand, within yeaPat 1876.452 kb on + strand, within yeaPat 1876.480 kb on + strand, within yeaPat 1876.506 kb on + strand, within yeaPat 1876.616 kb on + strand, within yeaPat 1876.639 kb on + strand, within yeaPat 1876.639 kb on + strand, within yeaPat 1876.668 kb on + strandat 1876.678 kb on - strandat 1876.707 kb on + strandat 1876.753 kb on + strandat 1876.753 kb on + strandat 1876.753 kb on + strandat 1876.770 kb on + strandat 1876.879 kb on - strand, within yoaKat 1876.879 kb on - strand, within yoaKat 1876.889 kb on - strandat 1876.889 kb on - strandat 1876.945 kb on + strand, within yoaJat 1876.945 kb on + strand, within yoaJat 1876.955 kb on + strand, within yoaJat 1876.963 kb on - strand, within yoaJat 1876.963 kb on - strand, within yoaJat 1877.005 kb on + strandat 1877.014 kb on - strandat 1877.035 kb on + strandat 1877.135 kb on - strand, within yeaQat 1877.137 kb on + strand, within yeaQat 1877.145 kb on - strand, within yeaQat 1877.145 kb on - strand, within yeaQat 1877.174 kb on - strand, within yeaQat 1877.175 kb on - strand, within yeaQat 1877.260 kb on + strandat 1877.433 kb on + strandat 1877.476 kb on + strand, within yoaGat 1877.476 kb on + strand, within yoaGat 1877.484 kb on - strand, within yoaGat 1877.513 kb on - strand, within yoaGat 1877.571 kb on - strand, within yoaGat 1877.602 kb on - strandat 1877.658 kb on - strand, within yeaRat 1877.663 kb on + strand, within yeaRat 1877.663 kb on + strand, within yeaRat 1877.714 kb on + strand, within yeaRat 1877.715 kb on - strand, within yeaRat 1877.764 kb on + strand, within yeaR

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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1,874,783 + -0.5
1,875,211 + yeaO b1792 0.80 -1.4
1,875,211 + yeaO b1792 0.80 -0.1
1,875,211 + yeaO b1792 0.80 +0.3
1,875,241 - yeaO b1792 0.89 +0.2
1,875,241 - yeaO b1792 0.89 +0.2
1,875,291 + +0.8
1,875,416 - yoaF b1793 0.45 +0.1
1,875,530 + yoaF b1793 0.89 +0.5
1,875,571 + +0.0
1,875,582 + -0.2
1,875,724 + -0.3
1,875,848 - yeaP b1794 0.11 +0.8
1,876,009 + yeaP b1794 0.26 +0.2
1,876,093 + yeaP b1794 0.35 +0.4
1,876,241 - yeaP b1794 0.49 +0.0
1,876,257 + yeaP b1794 0.50 +0.1
1,876,257 + yeaP b1794 0.50 +0.2
1,876,257 + yeaP b1794 0.50 +0.6
1,876,257 + yeaP b1794 0.50 -0.0
1,876,257 + yeaP b1794 0.50 -0.1
1,876,347 + yeaP b1794 0.59 +0.7
1,876,361 - yeaP b1794 0.61 +1.0
1,876,377 + yeaP b1794 0.62 +0.6
1,876,377 + yeaP b1794 0.62 +1.0
1,876,421 - yeaP b1794 0.66 +0.1
1,876,421 - yeaP b1794 0.66 +0.1
1,876,452 + yeaP b1794 0.69 +0.4
1,876,480 + yeaP b1794 0.72 +0.2
1,876,506 + yeaP b1794 0.75 +0.5
1,876,616 + yeaP b1794 0.85 +0.5
1,876,639 + yeaP b1794 0.88 -0.2
1,876,639 + yeaP b1794 0.88 +0.2
1,876,668 + -0.0
1,876,678 - -0.2
1,876,707 + +0.1
1,876,753 + -0.1
1,876,753 + -0.0
1,876,753 + +0.1
1,876,770 + -0.5
1,876,879 - yoaK b4676 0.83 +0.5
1,876,879 - yoaK b4676 0.83 +1.8
1,876,889 - +0.8
1,876,889 - +0.8
1,876,945 + yoaJ b4675 0.63 +0.2
1,876,945 + yoaJ b4675 0.63 +0.6
1,876,955 + yoaJ b4675 0.76 -0.4
1,876,963 - yoaJ b4675 0.87 +0.8
1,876,963 - yoaJ b4675 0.87 +0.9
1,877,005 + +1.8
1,877,014 - -0.3
1,877,035 + +0.5
1,877,135 - yeaQ b1795 0.42 -0.3
1,877,137 + yeaQ b1795 0.43 +0.2
1,877,145 - yeaQ b1795 0.46 -0.1
1,877,145 - yeaQ b1795 0.46 +0.2
1,877,174 - yeaQ b1795 0.57 +0.1
1,877,175 - yeaQ b1795 0.58 +0.2
1,877,260 + -0.7
1,877,433 + +0.7
1,877,476 + yoaG b1796 0.27 -0.2
1,877,476 + yoaG b1796 0.27 -0.1
1,877,484 - yoaG b1796 0.31 +0.1
1,877,513 - yoaG b1796 0.47 -0.4
1,877,571 - yoaG b1796 0.79 -0.9
1,877,602 - -0.5
1,877,658 - yeaR b1797 0.12 -0.0
1,877,663 + yeaR b1797 0.14 -0.4
1,877,663 + yeaR b1797 0.14 -0.4
1,877,714 + yeaR b1797 0.28 +0.6
1,877,715 - yeaR b1797 0.28 -0.4
1,877,764 + yeaR b1797 0.42 +0.4

Or see this region's nucleotide sequence