Strain Fitness in Escherichia coli BW25113 around b1685

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynhE and sufA are separated by 8 nucleotidessufA and rydB are separated by 326 nucleotidesrydB and ydiH are separated by 153 nucleotidesydiH and ydiI are separated by 99 nucleotidesydiI and ydiJ overlap by 4 nucleotides b1683: ynhE - orf, hypothetical protein (VIMSS), at 1,760,546 to 1,762,033 ynhE b1684: sufA - iron-sulfur cluster assembly scaffold protein (NCBI), at 1,762,042 to 1,762,410 sufA b4430: rydB - regulatory sRNA (NCBI), at 1,762,737 to 1,762,804 rydB b1685: ydiH - predicted protein (RefSeq), at 1,762,958 to 1,763,146 ydiH b1686: ydiI - hypothetical protein (NCBI), at 1,763,246 to 1,763,656 ydiI b1687: ydiJ - predicted FAD-linked oxidoreductase (NCBI), at 1,763,653 to 1,766,709 ydiJ Position (kb) 1762 1763 1764Strain fitness (log2 ratio) -1 0 1at 1762.235 kb on - strand, within sufAat 1762.235 kb on - strand, within sufAat 1762.245 kb on - strand, within sufAat 1762.437 kb on + strandat 1762.521 kb on + strandat 1762.546 kb on - strandat 1762.891 kb on - strandat 1762.891 kb on - strandat 1762.904 kb on - strandat 1763.084 kb on - strand, within ydiHat 1763.150 kb on - strandat 1763.150 kb on - strandat 1763.186 kb on - strandat 1763.195 kb on + strandat 1763.195 kb on + strandat 1763.545 kb on + strand, within ydiIat 1763.577 kb on - strand, within ydiIat 1763.577 kb on - strand, within ydiIat 1763.692 kb on - strandat 1763.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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1,762,235 - sufA b1684 0.52 -0.1
1,762,235 - sufA b1684 0.52 -0.3
1,762,245 - sufA b1684 0.55 +0.7
1,762,437 + -1.7
1,762,521 + +0.2
1,762,546 - -0.0
1,762,891 - +0.4
1,762,891 - +0.1
1,762,904 - -0.1
1,763,084 - ydiH b1685 0.67 +0.6
1,763,150 - -0.0
1,763,150 - -0.7
1,763,186 - +1.2
1,763,195 + +0.4
1,763,195 + -0.5
1,763,545 + ydiI b1686 0.73 +0.3
1,763,577 - ydiI b1686 0.81 +0.2
1,763,577 - ydiI b1686 0.81 +0.0
1,763,692 - +0.4
1,763,886 - -0.0

Or see this region's nucleotide sequence