Strain Fitness in Escherichia coli BW25113 around b1591

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynfG and ynfH are separated by 1 nucleotidesynfH and b1591 are separated by 42 nucleotidesb1591 and b1592 are separated by 194 nucleotides b1589: ynfG - oxidoreductase, Fe-S subunit (NCBI), at 1,661,014 to 1,661,631 ynfG b1590: ynfH - oxidoreductase, membrane subunit (NCBI), at 1,661,633 to 1,662,487 ynfH b1591: b1591 - putative oxidoreductase component (VIMSS), at 1,662,530 to 1,663,144 b1591 b1592: b1592 - putative chloride channel (VIMSS), at 1,663,339 to 1,664,595 b1592 Position (kb) 1662 1663 1664Strain fitness (log2 ratio) -1 0 1at 1661.755 kb on + strand, within ynfHat 1661.755 kb on + strand, within ynfHat 1661.782 kb on - strand, within ynfHat 1661.851 kb on - strand, within ynfHat 1662.281 kb on + strand, within ynfHat 1662.281 kb on + strand, within ynfHat 1662.405 kb on + strandat 1662.482 kb on + strandat 1662.522 kb on + strandat 1662.589 kb on + strandat 1662.796 kb on + strand, within b1591at 1662.877 kb on + strand, within b1591at 1663.574 kb on + strand, within b1592at 1663.574 kb on + strand, within b1592at 1663.876 kb on - strand, within b1592at 1663.921 kb on - strand, within b1592at 1663.990 kb on - strand, within b1592at 1663.990 kb on - strand, within b1592at 1664.007 kb on + strand, within b1592at 1664.007 kb on + strand, within b1592at 1664.013 kb on + strand, within b1592

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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1,661,755 + ynfH b1590 0.14 +0.1
1,661,755 + ynfH b1590 0.14 +0.0
1,661,782 - ynfH b1590 0.17 +0.1
1,661,851 - ynfH b1590 0.25 +0.1
1,662,281 + ynfH b1590 0.76 +0.4
1,662,281 + ynfH b1590 0.76 -0.2
1,662,405 + +0.4
1,662,482 + -0.1
1,662,522 + -0.1
1,662,589 + +0.4
1,662,796 + b1591 b1591 0.43 +0.8
1,662,877 + b1591 b1591 0.56 +0.7
1,663,574 + b1592 b1592 0.19 -0.6
1,663,574 + b1592 b1592 0.19 +1.0
1,663,876 - b1592 b1592 0.43 -0.2
1,663,921 - b1592 b1592 0.46 +0.2
1,663,990 - b1592 b1592 0.52 -0.3
1,663,990 - b1592 b1592 0.52 -0.3
1,664,007 + b1592 b1592 0.53 -0.5
1,664,007 + b1592 b1592 0.53 +0.5
1,664,013 + b1592 b1592 0.54 +0.6

Or see this region's nucleotide sequence