Strain Fitness in Escherichia coli BW25113 around b1486

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntddpD and ddpC overlap by 4 nucleotidesddpC and ddpB overlap by 4 nucleotidesddpB and ddpA are separated by 1 nucleotides b1484: ddpD - D-ala-D-ala transporter subunit (NCBI), at 1,556,055 to 1,557,041 ddpD b1485: ddpC - D-ala-D-ala transporter subunit (NCBI), at 1,557,038 to 1,557,934 ddpC b1486: ddpB - D-ala-D-ala transporter subunit (NCBI), at 1,557,931 to 1,558,953 ddpB b1487: ddpA - D-ala-D-a la transporter subunit (NCBI), at 1,558,955 to 1,560,505 ddpA Position (kb) 1557 1558 1559Strain fitness (log2 ratio) -2 -1 0 1 2at 1557.386 kb on - strand, within ddpCat 1557.505 kb on + strand, within ddpCat 1557.505 kb on + strand, within ddpCat 1557.567 kb on + strand, within ddpCat 1557.628 kb on + strand, within ddpCat 1557.835 kb on + strand, within ddpCat 1557.835 kb on + strand, within ddpCat 1558.000 kb on - strandat 1558.010 kb on - strandat 1558.182 kb on - strand, within ddpBat 1558.182 kb on - strand, within ddpBat 1558.226 kb on + strand, within ddpBat 1558.573 kb on - strand, within ddpBat 1558.909 kb on + strandat 1558.909 kb on + strandat 1558.940 kb on - strandat 1559.057 kb on - strandat 1559.057 kb on - strandat 1559.426 kb on - strand, within ddpAat 1559.525 kb on - strand, within ddpAat 1559.596 kb on - strand, within ddpAat 1559.703 kb on - strand, within ddpAat 1559.785 kb on - strand, within ddpAat 1559.785 kb on - strand, within ddpA

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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1,557,386 - ddpC b1485 0.39 -0.5
1,557,505 + ddpC b1485 0.52 -1.8
1,557,505 + ddpC b1485 0.52 +0.3
1,557,567 + ddpC b1485 0.59 +0.3
1,557,628 + ddpC b1485 0.66 +0.7
1,557,835 + ddpC b1485 0.89 +0.4
1,557,835 + ddpC b1485 0.89 +0.2
1,558,000 - -0.1
1,558,010 - +0.5
1,558,182 - ddpB b1486 0.25 +2.1
1,558,182 - ddpB b1486 0.25 -0.3
1,558,226 + ddpB b1486 0.29 +1.0
1,558,573 - ddpB b1486 0.63 +0.5
1,558,909 + -0.6
1,558,909 + +1.1
1,558,940 - +0.1
1,559,057 - -0.3
1,559,057 - +0.1
1,559,426 - ddpA b1487 0.30 -0.5
1,559,525 - ddpA b1487 0.37 +0.1
1,559,596 - ddpA b1487 0.41 +0.2
1,559,703 - ddpA b1487 0.48 -0.6
1,559,785 - ddpA b1487 0.54 +1.0
1,559,785 - ddpA b1487 0.54 +0.4

Or see this region's nucleotide sequence