Experiment: Carbon source D-Mannitol 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynfM and asr are separated by 423 nucleotides asr and ydgU are separated by 92 nucleotides ydgU and ydgD are separated by 99 nucleotides
b1596: ynfM - predicted transporter (NCBI), at 1,667,723 to 1,668,976
ynfM
b1597: asr - acid shock protein (VIMSS), at 1,669,400 to 1,669,708
asr
b4601: ydgU - hypothetical protein (RefSeq), at 1,669,801 to 1,669,884
ydgU
b1598: ydgD - predicted peptidase (NCBI), at 1,669,984 to 1,670,805
ydgD
Position (kb)
1669
1670 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1668.526 kb on - strand, within ynfM at 1668.526 kb on - strand, within ynfM at 1668.589 kb on - strand, within ynfM at 1668.589 kb on - strand, within ynfM at 1668.590 kb on - strand, within ynfM at 1668.601 kb on + strand, within ynfM at 1668.601 kb on + strand, within ynfM at 1668.620 kb on + strand, within ynfM at 1668.620 kb on + strand, within ynfM at 1668.628 kb on - strand, within ynfM at 1668.628 kb on - strand, within ynfM at 1668.665 kb on - strand, within ynfM at 1668.665 kb on - strand, within ynfM at 1668.683 kb on + strand, within ynfM at 1668.683 kb on + strand, within ynfM at 1668.737 kb on - strand, within ynfM at 1668.834 kb on + strand, within ynfM at 1668.958 kb on - strand at 1668.958 kb on - strand at 1669.099 kb on + strand at 1669.099 kb on + strand at 1669.145 kb on + strand at 1669.289 kb on + strand at 1669.289 kb on + strand at 1669.289 kb on + strand at 1669.289 kb on + strand at 1669.305 kb on - strand at 1669.305 kb on - strand at 1669.361 kb on + strand at 1669.363 kb on - strand at 1669.433 kb on + strand, within asr at 1669.433 kb on + strand, within asr at 1669.436 kb on - strand, within asr at 1669.441 kb on - strand, within asr at 1669.441 kb on - strand, within asr at 1669.447 kb on - strand, within asr at 1669.468 kb on - strand, within asr at 1669.802 kb on - strand at 1669.991 kb on - strand at 1669.997 kb on + strand at 1670.135 kb on + strand, within ydgD at 1670.161 kb on - strand, within ydgD at 1670.248 kb on + strand, within ydgD at 1670.337 kb on - strand, within ydgD at 1670.575 kb on + strand, within ydgD at 1670.673 kb on - strand, within ydgD
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 5 mM remove 1,668,526 - ynfM b1596 0.64 -0.4 1,668,526 - ynfM b1596 0.64 +0.6 1,668,589 - ynfM b1596 0.69 -0.4 1,668,589 - ynfM b1596 0.69 +0.1 1,668,590 - ynfM b1596 0.69 -0.3 1,668,601 + ynfM b1596 0.70 +0.4 1,668,601 + ynfM b1596 0.70 +0.2 1,668,620 + ynfM b1596 0.72 +0.5 1,668,620 + ynfM b1596 0.72 +1.0 1,668,628 - ynfM b1596 0.72 +0.0 1,668,628 - ynfM b1596 0.72 +0.8 1,668,665 - ynfM b1596 0.75 +0.6 1,668,665 - ynfM b1596 0.75 -0.1 1,668,683 + ynfM b1596 0.77 -0.7 1,668,683 + ynfM b1596 0.77 +0.3 1,668,737 - ynfM b1596 0.81 -1.2 1,668,834 + ynfM b1596 0.89 +0.5 1,668,958 - -2.0 1,668,958 - -0.6 1,669,099 + +1.0 1,669,099 + -0.6 1,669,145 + +0.2 1,669,289 + +0.4 1,669,289 + +0.2 1,669,289 + +2.0 1,669,289 + -0.6 1,669,305 - +0.4 1,669,305 - +0.2 1,669,361 + +0.5 1,669,363 - +0.4 1,669,433 + asr b1597 0.11 +0.1 1,669,433 + asr b1597 0.11 +1.5 1,669,436 - asr b1597 0.12 +0.3 1,669,441 - asr b1597 0.13 -0.2 1,669,441 - asr b1597 0.13 -0.5 1,669,447 - asr b1597 0.15 +0.4 1,669,468 - asr b1597 0.22 +1.4 1,669,802 - -0.1 1,669,991 - -0.3 1,669,997 + +0.6 1,670,135 + ydgD b1598 0.18 +0.1 1,670,161 - ydgD b1598 0.22 -0.2 1,670,248 + ydgD b1598 0.32 -0.0 1,670,337 - ydgD b1598 0.43 -0.6 1,670,575 + ydgD b1598 0.72 +0.1 1,670,673 - ydgD b1598 0.84 -0.8
Or see this region's nucleotide sequence