Experiment: Carbon source D-Mannitol 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydfV and flxA are separated by 202 nucleotides flxA and intK are separated by 436 nucleotides intK and ydfX are separated by 1 nucleotides ydfX and dicC overlap by 17 nucleotides dicC and dicA are separated by 83 nucleotides
b1565: ydfV - Qin prophage; predicted protein (NCBI), at 1,643,921 to 1,644,226
ydfV
b1566: flxA - Qin prophage; predicted protein (NCBI), at 1,644,429 to 1,644,761
flxA
b1567: intK - Qin prophage; predicted protein (RefSeq), at 1,645,198 to 1,645,380
intK
b1568: ydfX - Qin prophage; predicted protein (RefSeq), at 1,645,382 to 1,645,660
ydfX
b1569: dicC - Qin prophage; DNA-binding transcriptional regulator for DicB (NCBI), at 1,645,644 to 1,645,874
dicC
b1570: dicA - Qin prophage; predicted regulator for DicB (NCBI), at 1,645,958 to 1,646,365
dicA
Position (kb)
1645
1646 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1644.248 kb on - strand at 1644.258 kb on - strand at 1644.283 kb on + strand at 1644.290 kb on + strand at 1644.306 kb on + strand at 1644.480 kb on + strand, within flxA at 1644.647 kb on + strand, within flxA at 1644.647 kb on + strand, within flxA at 1644.656 kb on + strand, within flxA at 1644.690 kb on + strand, within flxA at 1644.756 kb on + strand at 1644.756 kb on + strand at 1644.758 kb on + strand at 1644.774 kb on + strand at 1644.787 kb on - strand at 1644.792 kb on - strand at 1644.809 kb on - strand at 1644.809 kb on - strand at 1644.870 kb on - strand at 1644.870 kb on - strand at 1644.870 kb on - strand at 1644.890 kb on - strand at 1644.918 kb on - strand at 1644.986 kb on - strand at 1645.019 kb on + strand at 1645.019 kb on + strand at 1645.027 kb on - strand at 1645.027 kb on - strand at 1645.038 kb on - strand at 1645.060 kb on + strand at 1645.062 kb on + strand at 1645.087 kb on + strand at 1645.116 kb on - strand at 1645.144 kb on + strand at 1645.145 kb on + strand at 1645.174 kb on - strand at 1645.176 kb on - strand at 1645.280 kb on + strand, within intK at 1645.288 kb on - strand, within intK at 1645.295 kb on + strand, within intK at 1645.408 kb on - strand at 1645.408 kb on - strand at 1645.546 kb on + strand, within ydfX at 1645.640 kb on + strand at 1645.640 kb on + strand at 1645.650 kb on - strand at 1645.725 kb on - strand, within dicC at 1645.725 kb on - strand, within dicC at 1645.940 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 5 mM remove 1,644,248 - +1.0 1,644,258 - +1.0 1,644,283 + -0.4 1,644,290 + -0.1 1,644,306 + -0.3 1,644,480 + flxA b1566 0.15 -0.1 1,644,647 + flxA b1566 0.65 -0.2 1,644,647 + flxA b1566 0.65 +0.4 1,644,656 + flxA b1566 0.68 -0.1 1,644,690 + flxA b1566 0.78 +0.0 1,644,756 + -1.8 1,644,756 + +2.8 1,644,758 + -0.2 1,644,774 + +0.1 1,644,787 - +0.0 1,644,792 - +1.0 1,644,809 - +0.3 1,644,809 - +0.8 1,644,870 - +1.2 1,644,870 - -0.4 1,644,870 - +0.8 1,644,890 - -0.3 1,644,918 - -0.2 1,644,986 - +0.0 1,645,019 + +0.0 1,645,019 + +1.0 1,645,027 - +0.1 1,645,027 - +0.4 1,645,038 - +0.8 1,645,060 + -0.1 1,645,062 + +1.0 1,645,087 + +0.5 1,645,116 - +0.3 1,645,144 + -0.6 1,645,145 + +0.6 1,645,174 - +0.9 1,645,176 - +0.4 1,645,280 + intK b1567 0.45 +0.6 1,645,288 - intK b1567 0.49 +0.6 1,645,295 + intK b1567 0.53 +1.3 1,645,408 - -0.0 1,645,408 - -0.2 1,645,546 + ydfX b1568 0.59 +0.7 1,645,640 + +0.3 1,645,640 + +1.0 1,645,650 - -0.1 1,645,725 - dicC b1569 0.35 +0.0 1,645,725 - dicC b1569 0.35 -0.3 1,645,940 + +0.0
Or see this region's nucleotide sequence