Strain Fitness in Escherichia coli BW25113 around b2237

Experiment: Carbon source D-Mannitol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnrdB and yfaE overlap by 1 nucleotidesyfaE and inaA are separated by 53 nucleotidesinaA and yfaH are separated by 178 nucleotidesyfaH and glpQ are separated by 41 nucleotides b2235: nrdB - ribonucleotide-diphosphate reductase beta subunit (NCBI), at 2,345,406 to 2,346,536 nrdB b2236: yfaE - predicted 2Fe-2S cluster-containing protein (NCBI), at 2,346,536 to 2,346,790 yfaE b2237: inaA - hypothetical protein (NCBI), at 2,346,844 to 2,347,494 inaA b2238: yfaH - hypothetical protein (RefSeq), at 2,347,673 to 2,347,915 yfaH b2239: glpQ - periplasmic glycerophosphodiester phosphodiesterase (NCBI), at 2,347,957 to 2,349,033 glpQ Position (kb) 2346 2347 2348Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2346.543 kb on + strandat 2346.585 kb on - strand, within yfaEat 2346.626 kb on - strand, within yfaEat 2346.721 kb on - strand, within yfaEat 2346.851 kb on + strandat 2346.976 kb on - strand, within inaAat 2347.083 kb on + strand, within inaAat 2347.130 kb on + strand, within inaAat 2347.184 kb on + strand, within inaAat 2347.346 kb on + strand, within inaAat 2347.361 kb on - strand, within inaAat 2347.608 kb on - strandat 2347.641 kb on - strandat 2347.641 kb on - strandat 2347.653 kb on + strandat 2347.855 kb on - strand, within yfaHat 2347.949 kb on - strandat 2347.955 kb on + strandat 2348.019 kb on + strandat 2348.055 kb on + strandat 2348.084 kb on - strand, within glpQat 2348.084 kb on - strand, within glpQat 2348.093 kb on + strand, within glpQat 2348.099 kb on - strand, within glpQat 2348.101 kb on - strand, within glpQat 2348.101 kb on - strand, within glpQat 2348.101 kb on - strand, within glpQat 2348.101 kb on - strand, within glpQat 2348.101 kb on - strand, within glpQat 2348.137 kb on - strand, within glpQat 2348.149 kb on - strand, within glpQat 2348.149 kb on - strand, within glpQat 2348.153 kb on + strand, within glpQat 2348.211 kb on + strand, within glpQat 2348.219 kb on - strand, within glpQat 2348.338 kb on - strand, within glpQ

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 10 mM
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2,346,543 + -0.1
2,346,585 - yfaE b2236 0.19 +0.6
2,346,626 - yfaE b2236 0.35 +1.0
2,346,721 - yfaE b2236 0.73 +0.5
2,346,851 + +0.7
2,346,976 - inaA b2237 0.20 +1.6
2,347,083 + inaA b2237 0.37 -0.7
2,347,130 + inaA b2237 0.44 +0.5
2,347,184 + inaA b2237 0.52 +0.8
2,347,346 + inaA b2237 0.77 +0.4
2,347,361 - inaA b2237 0.79 -0.3
2,347,608 - +0.2
2,347,641 - +0.1
2,347,641 - +0.2
2,347,653 + -0.2
2,347,855 - yfaH b2238 0.75 +0.4
2,347,949 - -0.4
2,347,955 + +1.0
2,348,019 + +0.1
2,348,055 + -0.4
2,348,084 - glpQ b2239 0.12 +0.3
2,348,084 - glpQ b2239 0.12 +0.4
2,348,093 + glpQ b2239 0.13 +0.6
2,348,099 - glpQ b2239 0.13 -3.8
2,348,101 - glpQ b2239 0.13 -0.4
2,348,101 - glpQ b2239 0.13 +0.3
2,348,101 - glpQ b2239 0.13 +0.0
2,348,101 - glpQ b2239 0.13 +0.3
2,348,101 - glpQ b2239 0.13 -0.1
2,348,137 - glpQ b2239 0.17 -0.3
2,348,149 - glpQ b2239 0.18 -0.2
2,348,149 - glpQ b2239 0.18 +0.9
2,348,153 + glpQ b2239 0.18 -0.1
2,348,211 + glpQ b2239 0.24 -0.3
2,348,219 - glpQ b2239 0.24 +0.3
2,348,338 - glpQ b2239 0.35 -0.1

Or see this region's nucleotide sequence