Strain Fitness in Escherichia coli BW25113 around b1697

Experiment: Carbon source D-Mannitol 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydiP and ydiQ are separated by 315 nucleotidesydiQ and ydiR are separated by 19 nucleotides b1696: ydiP - predicted DNA-binding transcriptional regulator (NCBI), at 1,776,414 to 1,777,325 ydiP b1697: ydiQ - hypothetical protein (NCBI), at 1,777,641 to 1,778,405 ydiQ b1698: ydiR - predicted electron transfer flavoprotein, FAD-binding (NCBI), at 1,778,425 to 1,779,363 ydiR Position (kb) 1777 1778 1779Strain fitness (log2 ratio) -1 0 1at 1776.867 kb on - strand, within ydiPat 1777.038 kb on - strand, within ydiPat 1777.038 kb on - strand, within ydiPat 1777.038 kb on - strand, within ydiPat 1777.216 kb on + strand, within ydiPat 1777.304 kb on + strandat 1777.341 kb on - strandat 1777.347 kb on - strandat 1777.355 kb on + strandat 1777.413 kb on - strandat 1777.413 kb on - strandat 1777.449 kb on + strandat 1777.456 kb on + strandat 1777.548 kb on - strandat 1777.564 kb on + strandat 1777.618 kb on + strandat 1777.685 kb on - strandat 1777.690 kb on - strandat 1777.700 kb on + strandat 1777.704 kb on - strandat 1777.776 kb on - strand, within ydiQat 1777.865 kb on - strand, within ydiQat 1777.917 kb on - strand, within ydiQat 1778.003 kb on + strand, within ydiQat 1778.059 kb on + strand, within ydiQat 1778.071 kb on + strand, within ydiQat 1778.071 kb on + strand, within ydiQat 1778.071 kb on + strand, within ydiQat 1778.294 kb on + strand, within ydiQat 1778.469 kb on + strandat 1778.740 kb on + strand, within ydiRat 1778.933 kb on - strand, within ydiRat 1779.145 kb on + strand, within ydiRat 1779.222 kb on - strand, within ydiR

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 10 mM
remove
1,776,867 - ydiP b1696 0.50 -1.1
1,777,038 - ydiP b1696 0.68 +0.2
1,777,038 - ydiP b1696 0.68 +0.4
1,777,038 - ydiP b1696 0.68 +0.2
1,777,216 + ydiP b1696 0.88 -0.1
1,777,304 + +0.3
1,777,341 - -0.4
1,777,347 - +0.2
1,777,355 + -1.1
1,777,413 - -0.4
1,777,413 - -0.7
1,777,449 + +0.9
1,777,456 + -0.1
1,777,548 - -0.2
1,777,564 + +0.9
1,777,618 + +0.0
1,777,685 - +0.0
1,777,690 - +0.2
1,777,700 + +0.7
1,777,704 - -0.2
1,777,776 - ydiQ b1697 0.18 +0.2
1,777,865 - ydiQ b1697 0.29 +0.1
1,777,917 - ydiQ b1697 0.36 +0.4
1,778,003 + ydiQ b1697 0.47 +1.1
1,778,059 + ydiQ b1697 0.55 -0.3
1,778,071 + ydiQ b1697 0.56 +0.5
1,778,071 + ydiQ b1697 0.56 +0.6
1,778,071 + ydiQ b1697 0.56 +1.5
1,778,294 + ydiQ b1697 0.85 +0.2
1,778,469 + +0.3
1,778,740 + ydiR b1698 0.34 -0.2
1,778,933 - ydiR b1698 0.54 +0.6
1,779,145 + ydiR b1698 0.77 -0.2
1,779,222 - ydiR b1698 0.85 +0.3

Or see this region's nucleotide sequence