Strain Fitness in Escherichia coli BW25113 around b1589

Experiment: Carbon source D-Mannitol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynfF and ynfG are separated by 10 nucleotidesynfG and ynfH are separated by 1 nucleotidesynfH and b1591 are separated by 42 nucleotides b1588: ynfF - oxidoreductase subunit (RefSeq), at 1,658,580 to 1,661,003 ynfF b1589: ynfG - oxidoreductase, Fe-S subunit (NCBI), at 1,661,014 to 1,661,631 ynfG b1590: ynfH - oxidoreductase, membrane subunit (NCBI), at 1,661,633 to 1,662,487 ynfH b1591: b1591 - putative oxidoreductase component (VIMSS), at 1,662,530 to 1,663,144 b1591 Position (kb) 1661 1662Strain fitness (log2 ratio) -1 0 1at 1660.102 kb on + strand, within ynfFat 1660.208 kb on + strand, within ynfFat 1660.366 kb on - strand, within ynfFat 1660.378 kb on + strand, within ynfFat 1660.766 kb on + strandat 1660.766 kb on + strandat 1660.779 kb on - strandat 1660.779 kb on - strandat 1660.790 kb on - strandat 1661.057 kb on - strandat 1661.346 kb on - strand, within ynfGat 1661.351 kb on + strand, within ynfGat 1661.351 kb on + strand, within ynfGat 1661.364 kb on - strand, within ynfGat 1661.755 kb on + strand, within ynfHat 1661.755 kb on + strand, within ynfHat 1661.782 kb on - strand, within ynfHat 1661.851 kb on - strand, within ynfHat 1662.281 kb on + strand, within ynfHat 1662.281 kb on + strand, within ynfHat 1662.405 kb on + strandat 1662.482 kb on + strandat 1662.522 kb on + strandat 1662.589 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 10 mM
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1,660,102 + ynfF b1588 0.63 +0.3
1,660,208 + ynfF b1588 0.67 +0.4
1,660,366 - ynfF b1588 0.74 +0.6
1,660,378 + ynfF b1588 0.74 -0.1
1,660,766 + -0.3
1,660,766 + +0.2
1,660,779 - -0.9
1,660,779 - +0.2
1,660,790 - -0.0
1,661,057 - +0.6
1,661,346 - ynfG b1589 0.54 -0.3
1,661,351 + ynfG b1589 0.55 +0.1
1,661,351 + ynfG b1589 0.55 +1.2
1,661,364 - ynfG b1589 0.57 +0.7
1,661,755 + ynfH b1590 0.14 -0.3
1,661,755 + ynfH b1590 0.14 +0.2
1,661,782 - ynfH b1590 0.17 -0.1
1,661,851 - ynfH b1590 0.25 +0.4
1,662,281 + ynfH b1590 0.76 -0.1
1,662,281 + ynfH b1590 0.76 -0.3
1,662,405 + -0.1
1,662,482 + +0.4
1,662,522 + -0.7
1,662,589 + -0.0

Or see this region's nucleotide sequence