Strain Fitness in Pseudomonas putida KT2440 around PP_4171

Experiment: Time6-phageFRS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4169 and PP_4171 are separated by 227 nucleotidesPP_4171 and PP_4172 overlap by 1 nucleotidesPP_4172 and PP_4173 overlap by 4 nucleotides PP_4169: PP_4169 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 4,710,516 to 4,711,541 _4169 PP_4171: PP_4171 - conserved exported protein of unknown function, at 4,711,769 to 4,713,883 _4171 PP_4172: PP_4172 - conserved exported protein of unknown function, at 4,713,883 to 4,714,773 _4172 PP_4173: PP_4173 - Sensor histidine kinase/response regulator, at 4,714,770 to 4,716,701 _4173 Position (kb) 4711 4712 4713 4714Strain fitness (log2 ratio) -1 0 1 2 3at 4711.542 kb on - strandat 4711.544 kb on - strandat 4711.587 kb on + strandat 4711.587 kb on + strandat 4711.588 kb on - strandat 4711.602 kb on - strandat 4711.629 kb on + strandat 4711.630 kb on - strandat 4711.630 kb on - strandat 4711.694 kb on - strandat 4711.694 kb on - strandat 4711.694 kb on - strandat 4711.694 kb on - strandat 4711.731 kb on + strandat 4711.732 kb on - strandat 4711.806 kb on + strandat 4711.806 kb on + strandat 4711.935 kb on + strandat 4711.998 kb on + strand, within PP_4171at 4711.998 kb on + strand, within PP_4171at 4712.048 kb on + strand, within PP_4171at 4712.049 kb on - strand, within PP_4171at 4712.049 kb on - strand, within PP_4171at 4712.088 kb on + strand, within PP_4171at 4712.089 kb on - strand, within PP_4171at 4712.089 kb on - strand, within PP_4171at 4712.109 kb on + strand, within PP_4171at 4712.112 kb on - strand, within PP_4171at 4712.201 kb on - strand, within PP_4171at 4712.211 kb on - strand, within PP_4171at 4712.275 kb on + strand, within PP_4171at 4712.276 kb on - strand, within PP_4171at 4712.276 kb on - strand, within PP_4171at 4712.322 kb on - strand, within PP_4171at 4712.322 kb on - strand, within PP_4171at 4712.322 kb on - strand, within PP_4171at 4712.322 kb on - strand, within PP_4171at 4712.534 kb on + strand, within PP_4171at 4712.534 kb on + strand, within PP_4171at 4712.534 kb on + strand, within PP_4171at 4712.534 kb on + strand, within PP_4171at 4712.534 kb on + strand, within PP_4171at 4712.535 kb on - strand, within PP_4171at 4712.535 kb on - strand, within PP_4171at 4712.540 kb on + strand, within PP_4171at 4712.541 kb on - strand, within PP_4171at 4712.561 kb on + strand, within PP_4171at 4712.600 kb on + strand, within PP_4171at 4712.600 kb on + strand, within PP_4171at 4712.600 kb on + strand, within PP_4171at 4712.601 kb on - strand, within PP_4171at 4712.601 kb on - strand, within PP_4171at 4712.651 kb on + strand, within PP_4171at 4712.651 kb on + strand, within PP_4171at 4712.651 kb on + strand, within PP_4171at 4712.651 kb on + strand, within PP_4171at 4712.651 kb on + strand, within PP_4171at 4712.651 kb on + strand, within PP_4171at 4712.651 kb on + strand, within PP_4171at 4712.651 kb on + strand, within PP_4171at 4712.652 kb on - strand, within PP_4171at 4712.652 kb on - strand, within PP_4171at 4712.652 kb on - strand, within PP_4171at 4712.653 kb on + strand, within PP_4171at 4712.922 kb on - strand, within PP_4171at 4712.922 kb on - strand, within PP_4171at 4712.987 kb on + strand, within PP_4171at 4712.987 kb on + strand, within PP_4171at 4712.987 kb on + strand, within PP_4171at 4712.988 kb on - strand, within PP_4171at 4712.993 kb on + strand, within PP_4171at 4713.017 kb on + strand, within PP_4171at 4713.018 kb on - strand, within PP_4171at 4713.018 kb on - strand, within PP_4171at 4713.018 kb on - strand, within PP_4171at 4713.167 kb on + strand, within PP_4171at 4713.168 kb on - strand, within PP_4171at 4713.168 kb on - strand, within PP_4171at 4713.168 kb on - strand, within PP_4171at 4713.257 kb on + strand, within PP_4171at 4713.258 kb on - strand, within PP_4171at 4713.308 kb on + strand, within PP_4171at 4713.308 kb on + strandat 4713.308 kb on + strand, within PP_4171at 4713.309 kb on - strand, within PP_4171at 4713.309 kb on - strand, within PP_4171at 4713.370 kb on - strand, within PP_4171at 4713.375 kb on - strand, within PP_4171at 4713.375 kb on - strand, within PP_4171at 4713.383 kb on + strand, within PP_4171at 4713.425 kb on + strand, within PP_4171at 4713.426 kb on - strand, within PP_4171at 4713.426 kb on - strand, within PP_4171at 4713.473 kb on + strand, within PP_4171at 4713.473 kb on + strand, within PP_4171at 4713.474 kb on - strand, within PP_4171at 4713.566 kb on + strand, within PP_4171at 4713.566 kb on + strand, within PP_4171at 4713.566 kb on + strand, within PP_4171at 4713.566 kb on + strand, within PP_4171at 4713.566 kb on + strand, within PP_4171at 4713.567 kb on - strand, within PP_4171at 4713.567 kb on - strand, within PP_4171at 4713.572 kb on + strandat 4713.572 kb on + strand, within PP_4171at 4713.573 kb on - strand, within PP_4171at 4713.573 kb on - strand, within PP_4171at 4713.573 kb on - strand, within PP_4171at 4713.684 kb on - strandat 4713.684 kb on - strandat 4713.684 kb on - strandat 4713.687 kb on - strandat 4713.716 kb on + strandat 4713.758 kb on + strandat 4713.758 kb on + strandat 4713.758 kb on + strandat 4713.758 kb on + strandat 4713.759 kb on - strandat 4713.759 kb on - strandat 4713.759 kb on - strandat 4713.836 kb on + strandat 4713.837 kb on - strandat 4713.983 kb on + strand, within PP_4172at 4713.984 kb on - strand, within PP_4172at 4713.984 kb on - strand, within PP_4172at 4713.984 kb on - strand, within PP_4172at 4713.984 kb on - strand, within PP_4172at 4714.270 kb on + strand, within PP_4172at 4714.271 kb on - strand, within PP_4172at 4714.307 kb on - strand, within PP_4172at 4714.471 kb on + strand, within PP_4172at 4714.471 kb on + strand, within PP_4172at 4714.511 kb on - strand, within PP_4172at 4714.511 kb on - strand, within PP_4172at 4714.576 kb on - strand, within PP_4172at 4714.580 kb on - strand, within PP_4172at 4714.580 kb on - strand, within PP_4172at 4714.580 kb on - strand, within PP_4172at 4714.800 kb on - strandat 4714.873 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-phageFRS
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4,711,542 - -1.7
4,711,544 - -0.0
4,711,587 + +0.2
4,711,587 + -0.1
4,711,588 - +1.9
4,711,602 - -0.9
4,711,629 + -0.4
4,711,630 - -0.3
4,711,630 - -0.5
4,711,694 - -0.7
4,711,694 - -1.3
4,711,694 - -0.5
4,711,694 - -0.3
4,711,731 + -0.4
4,711,732 - +0.3
4,711,806 + +0.3
4,711,806 + +1.2
4,711,935 + +0.8
4,711,998 + PP_4171 0.11 +1.2
4,711,998 + PP_4171 0.11 +0.7
4,712,048 + PP_4171 0.13 +1.5
4,712,049 - PP_4171 0.13 +0.6
4,712,049 - PP_4171 0.13 +1.9
4,712,088 + PP_4171 0.15 +1.0
4,712,089 - PP_4171 0.15 +0.5
4,712,089 - PP_4171 0.15 +0.9
4,712,109 + PP_4171 0.16 +0.4
4,712,112 - PP_4171 0.16 -0.1
4,712,201 - PP_4171 0.20 +0.9
4,712,211 - PP_4171 0.21 +0.7
4,712,275 + PP_4171 0.24 +1.3
4,712,276 - PP_4171 0.24 -0.1
4,712,276 - PP_4171 0.24 +1.2
4,712,322 - PP_4171 0.26 +0.5
4,712,322 - PP_4171 0.26 +0.6
4,712,322 - PP_4171 0.26 +1.4
4,712,322 - PP_4171 0.26 +1.3
4,712,534 + PP_4171 0.36 +0.7
4,712,534 + PP_4171 0.36 +1.2
4,712,534 + PP_4171 0.36 +0.8
4,712,534 + PP_4171 0.36 +0.5
4,712,534 + PP_4171 0.36 +0.3
4,712,535 - PP_4171 0.36 +0.8
4,712,535 - PP_4171 0.36 +0.3
4,712,540 + PP_4171 0.36 +0.3
4,712,541 - PP_4171 0.37 +0.5
4,712,561 + PP_4171 0.37 +0.5
4,712,600 + PP_4171 0.39 +1.2
4,712,600 + PP_4171 0.39 +0.7
4,712,600 + PP_4171 0.39 +0.6
4,712,601 - PP_4171 0.39 +0.5
4,712,601 - PP_4171 0.39 +0.7
4,712,651 + PP_4171 0.42 +1.3
4,712,651 + PP_4171 0.42 +0.8
4,712,651 + PP_4171 0.42 +0.5
4,712,651 + PP_4171 0.42 +0.5
4,712,651 + PP_4171 0.42 -0.6
4,712,651 + PP_4171 0.42 +0.2
4,712,651 + PP_4171 0.42 +1.5
4,712,651 + PP_4171 0.42 +1.7
4,712,652 - PP_4171 0.42 +0.7
4,712,652 - PP_4171 0.42 +0.8
4,712,652 - PP_4171 0.42 +0.4
4,712,653 + PP_4171 0.42 +0.9
4,712,922 - PP_4171 0.55 +0.5
4,712,922 - PP_4171 0.55 +0.5
4,712,987 + PP_4171 0.58 +0.3
4,712,987 + PP_4171 0.58 +1.0
4,712,987 + PP_4171 0.58 +0.3
4,712,988 - PP_4171 0.58 +0.9
4,712,993 + PP_4171 0.58 +0.3
4,713,017 + PP_4171 0.59 -0.1
4,713,018 - PP_4171 0.59 +1.4
4,713,018 - PP_4171 0.59 +0.6
4,713,018 - PP_4171 0.59 +1.3
4,713,167 + PP_4171 0.66 +0.8
4,713,168 - PP_4171 0.66 +1.0
4,713,168 - PP_4171 0.66 +0.5
4,713,168 - PP_4171 0.66 +0.3
4,713,257 + PP_4171 0.70 +0.6
4,713,258 - PP_4171 0.70 +0.2
4,713,308 + PP_4171 0.73 +0.6
4,713,308 + -0.5
4,713,308 + PP_4171 0.73 +0.4
4,713,309 - PP_4171 0.73 +0.5
4,713,309 - PP_4171 0.73 +0.9
4,713,370 - PP_4171 0.76 +1.1
4,713,375 - PP_4171 0.76 +0.5
4,713,375 - PP_4171 0.76 +0.1
4,713,383 + PP_4171 0.76 +0.6
4,713,425 + PP_4171 0.78 +1.0
4,713,426 - PP_4171 0.78 +0.8
4,713,426 - PP_4171 0.78 +0.6
4,713,473 + PP_4171 0.81 +0.9
4,713,473 + PP_4171 0.81 +0.6
4,713,474 - PP_4171 0.81 +1.5
4,713,566 + PP_4171 0.85 +0.5
4,713,566 + PP_4171 0.85 +1.2
4,713,566 + PP_4171 0.85 +0.5
4,713,566 + PP_4171 0.85 +0.8
4,713,566 + PP_4171 0.85 +0.6
4,713,567 - PP_4171 0.85 +1.4
4,713,567 - PP_4171 0.85 +1.0
4,713,572 + +2.9
4,713,572 + PP_4171 0.85 +0.8
4,713,573 - PP_4171 0.85 -0.2
4,713,573 - PP_4171 0.85 +1.8
4,713,573 - PP_4171 0.85 +1.1
4,713,684 - +1.0
4,713,684 - -0.2
4,713,684 - +1.1
4,713,687 - -0.1
4,713,716 + +0.1
4,713,758 + +0.6
4,713,758 + +1.0
4,713,758 + +1.3
4,713,758 + +1.2
4,713,759 - +0.4
4,713,759 - +0.5
4,713,759 - +0.6
4,713,836 + +1.0
4,713,837 - +0.3
4,713,983 + PP_4172 0.11 +2.3
4,713,984 - PP_4172 0.11 +1.1
4,713,984 - PP_4172 0.11 +1.2
4,713,984 - PP_4172 0.11 +0.4
4,713,984 - PP_4172 0.11 +0.5
4,714,270 + PP_4172 0.43 +1.3
4,714,271 - PP_4172 0.44 +0.6
4,714,307 - PP_4172 0.48 +0.5
4,714,471 + PP_4172 0.66 -1.0
4,714,471 + PP_4172 0.66 -1.5
4,714,511 - PP_4172 0.70 +1.0
4,714,511 - PP_4172 0.70 +1.2
4,714,576 - PP_4172 0.78 +0.8
4,714,580 - PP_4172 0.78 +0.7
4,714,580 - PP_4172 0.78 +1.0
4,714,580 - PP_4172 0.78 +1.4
4,714,800 - +0.7
4,714,873 + +1.1

Or see this region's nucleotide sequence