Strain Fitness in Pseudomonas putida KT2440 around PP_0930

Experiment: Time6-phageFRS

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0928 and PP_0929 are separated by 60 nucleotidesPP_0929 and PP_0930 are separated by 126 nucleotidesPP_0930 and PP_0931 are separated by 11 nucleotides PP_0928: PP_0928 - K+-dependent Na+/Ca+ exchanger related-protein, at 1,070,342 to 1,071,385 _0928 PP_0929: PP_0929 - putative Lipoprotein, at 1,071,446 to 1,071,820 _0929 PP_0930: PP_0930 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 1,071,947 to 1,073,392 _0930 PP_0931: PP_0931 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 1,073,404 to 1,074,855 _0931 Position (kb) 1071 1072 1073 1074Strain fitness (log2 ratio) -2 -1 0 1at 1070.959 kb on - strand, within PP_0928at 1070.992 kb on - strand, within PP_0928at 1071.011 kb on + strand, within PP_0928at 1071.011 kb on + strand, within PP_0928at 1071.012 kb on - strand, within PP_0928at 1071.012 kb on - strand, within PP_0928at 1071.012 kb on - strand, within PP_0928at 1071.164 kb on + strand, within PP_0928at 1071.165 kb on - strand, within PP_0928at 1071.240 kb on - strand, within PP_0928at 1071.259 kb on + strand, within PP_0928at 1071.287 kb on + strandat 1071.287 kb on + strandat 1071.287 kb on + strandat 1071.287 kb on + strandat 1071.287 kb on + strandat 1071.287 kb on + strandat 1071.345 kb on - strandat 1071.398 kb on - strandat 1071.455 kb on - strandat 1071.465 kb on - strandat 1071.566 kb on + strand, within PP_0929at 1071.573 kb on - strand, within PP_0929at 1071.573 kb on - strand, within PP_0929at 1071.573 kb on - strand, within PP_0929at 1071.650 kb on - strand, within PP_0929at 1071.711 kb on + strand, within PP_0929at 1071.712 kb on - strand, within PP_0929at 1071.712 kb on - strand, within PP_0929at 1071.714 kb on + strand, within PP_0929at 1071.714 kb on + strand, within PP_0929at 1071.714 kb on + strand, within PP_0929at 1071.714 kb on + strand, within PP_0929at 1071.715 kb on - strand, within PP_0929at 1071.815 kb on + strandat 1071.815 kb on + strandat 1071.815 kb on + strandat 1071.815 kb on + strandat 1071.816 kb on - strandat 1071.816 kb on - strandat 1071.816 kb on - strandat 1071.931 kb on + strandat 1071.931 kb on + strandat 1071.931 kb on + strandat 1071.931 kb on + strandat 1071.932 kb on - strandat 1071.932 kb on - strandat 1071.932 kb on - strandat 1071.939 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Time6-phageFRS
remove
1,070,959 - PP_0928 0.59 -1.0
1,070,992 - PP_0928 0.62 +1.4
1,071,011 + PP_0928 0.64 +0.9
1,071,011 + PP_0928 0.64 +0.5
1,071,012 - PP_0928 0.64 -0.1
1,071,012 - PP_0928 0.64 -0.2
1,071,012 - PP_0928 0.64 +1.0
1,071,164 + PP_0928 0.79 -1.0
1,071,165 - PP_0928 0.79 -0.5
1,071,240 - PP_0928 0.86 -1.1
1,071,259 + PP_0928 0.88 -1.6
1,071,287 + +1.1
1,071,287 + +1.0
1,071,287 + -0.9
1,071,287 + -1.1
1,071,287 + +0.4
1,071,287 + -0.0
1,071,345 - -0.3
1,071,398 - -0.9
1,071,455 - +0.4
1,071,465 - -0.6
1,071,566 + PP_0929 0.32 -0.6
1,071,573 - PP_0929 0.34 +0.7
1,071,573 - PP_0929 0.34 -1.0
1,071,573 - PP_0929 0.34 +0.7
1,071,650 - PP_0929 0.54 -0.4
1,071,711 + PP_0929 0.71 +0.2
1,071,712 - PP_0929 0.71 +0.1
1,071,712 - PP_0929 0.71 -0.1
1,071,714 + PP_0929 0.71 +0.6
1,071,714 + PP_0929 0.71 -0.7
1,071,714 + PP_0929 0.71 +0.8
1,071,714 + PP_0929 0.71 -0.7
1,071,715 - PP_0929 0.72 -0.6
1,071,815 + +0.0
1,071,815 + -0.9
1,071,815 + -0.0
1,071,815 + +0.4
1,071,816 - -0.8
1,071,816 - +1.6
1,071,816 - -0.8
1,071,931 + +1.4
1,071,931 + +0.8
1,071,931 + +0.2
1,071,931 + -2.3
1,071,932 - -1.9
1,071,932 - -0.5
1,071,932 - -0.5
1,071,939 + -0.3

Or see this region's nucleotide sequence