Experiment: Time6-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0494 and PP_t75 are separated by 6 nucleotides PP_t75 and PP_0495 are separated by 106 nucleotides PP_0495 and PP_0496 are separated by 72 nucleotides
PP_0494: PP_0494 - selenocysteyl-tRNA-specific translation elongation factor, at 582,135 to 584,057
_0494
PP_t75: PP_t75 - tRNA-Sec, at 584,064 to 584,159
_t75
PP_0495: PP_0495 - type 1 L-asparaginase, at 584,266 to 585,255
_0495
PP_0496: PP_0496 - Sodium/alanine symporter, at 585,328 to 586,770
_0496
Position (kb) 584
585
586 Strain fitness (log2 ratio) -2
-1
0
1 at 583.645 kb on + strand, within PP_0494 at 583.777 kb on + strand, within PP_0494 at 583.897 kb on + strand at 583.897 kb on + strand at 583.898 kb on - strand at 583.922 kb on + strand at 583.922 kb on + strand at 583.922 kb on + strand at 584.203 kb on - strand at 584.203 kb on - strand at 584.339 kb on - strand at 584.426 kb on + strand, within PP_0495 at 584.426 kb on + strand, within PP_0495 at 584.427 kb on - strand, within PP_0495 at 584.427 kb on - strand, within PP_0495 at 584.427 kb on - strand, within PP_0495 at 584.427 kb on - strand, within PP_0495 at 584.467 kb on - strand, within PP_0495 at 584.552 kb on + strand, within PP_0495 at 584.586 kb on - strand, within PP_0495 at 584.587 kb on + strand, within PP_0495 at 584.626 kb on + strand, within PP_0495 at 584.670 kb on - strand, within PP_0495 at 584.670 kb on - strand, within PP_0495 at 584.756 kb on - strand, within PP_0495 at 584.798 kb on + strand, within PP_0495 at 584.798 kb on + strand, within PP_0495 at 584.798 kb on + strand, within PP_0495 at 584.799 kb on - strand, within PP_0495 at 584.911 kb on + strand, within PP_0495 at 584.912 kb on - strand, within PP_0495 at 584.912 kb on - strand, within PP_0495 at 584.912 kb on - strand, within PP_0495 at 584.961 kb on - strand, within PP_0495 at 585.066 kb on + strand, within PP_0495 at 585.067 kb on - strand, within PP_0495 at 585.067 kb on - strand, within PP_0495 at 585.224 kb on + strand at 585.224 kb on + strand at 585.224 kb on + strand at 585.245 kb on - strand at 585.455 kb on - strand at 585.455 kb on - strand at 585.479 kb on + strand, within PP_0496 at 585.479 kb on + strand, within PP_0496 at 585.692 kb on + strand, within PP_0496 at 585.692 kb on + strand, within PP_0496 at 585.692 kb on + strand, within PP_0496 at 585.692 kb on + strand, within PP_0496 at 585.693 kb on - strand, within PP_0496 at 585.695 kb on + strand, within PP_0496 at 585.695 kb on + strand, within PP_0496 at 585.696 kb on - strand, within PP_0496 at 585.696 kb on - strand, within PP_0496 at 585.696 kb on - strand, within PP_0496 at 585.696 kb on - strand, within PP_0496 at 585.701 kb on + strand, within PP_0496 at 585.701 kb on + strand, within PP_0496 at 585.702 kb on - strand, within PP_0496 at 585.702 kb on - strand, within PP_0496 at 585.827 kb on + strand, within PP_0496 at 585.827 kb on + strand, within PP_0496 at 585.828 kb on - strand, within PP_0496 at 586.118 kb on + strand, within PP_0496 at 586.119 kb on - strand, within PP_0496
Per-strain Table
Position Strand Gene LocusTag Fraction Time6-nophage remove 583,645 + PP_0494 0.79 +0.8 583,777 + PP_0494 0.85 -0.3 583,897 + +0.6 583,897 + +0.2 583,898 - +0.2 583,922 + +0.1 583,922 + -0.5 583,922 + +0.4 584,203 - +1.7 584,203 - -0.4 584,339 - -1.5 584,426 + PP_0495 0.16 -1.5 584,426 + PP_0495 0.16 -0.6 584,427 - PP_0495 0.16 +0.7 584,427 - PP_0495 0.16 -1.8 584,427 - PP_0495 0.16 -0.3 584,427 - PP_0495 0.16 -0.9 584,467 - PP_0495 0.20 +0.7 584,552 + PP_0495 0.29 -0.6 584,586 - PP_0495 0.32 +0.1 584,587 + PP_0495 0.32 -0.6 584,626 + PP_0495 0.36 -1.1 584,670 - PP_0495 0.41 -1.1 584,670 - PP_0495 0.41 -0.3 584,756 - PP_0495 0.49 -1.5 584,798 + PP_0495 0.54 -1.6 584,798 + PP_0495 0.54 -1.5 584,798 + PP_0495 0.54 +0.1 584,799 - PP_0495 0.54 -1.1 584,911 + PP_0495 0.65 -1.6 584,912 - PP_0495 0.65 -0.3 584,912 - PP_0495 0.65 -0.9 584,912 - PP_0495 0.65 -0.9 584,961 - PP_0495 0.70 +0.1 585,066 + PP_0495 0.81 -1.6 585,067 - PP_0495 0.81 +1.7 585,067 - PP_0495 0.81 -0.3 585,224 + +0.1 585,224 + -0.3 585,224 + -1.3 585,245 - -0.6 585,455 - +0.4 585,455 - +0.7 585,479 + PP_0496 0.10 +0.6 585,479 + PP_0496 0.10 +0.0 585,692 + PP_0496 0.25 +0.7 585,692 + PP_0496 0.25 +0.1 585,692 + PP_0496 0.25 -1.1 585,692 + PP_0496 0.25 +0.1 585,693 - PP_0496 0.25 -1.1 585,695 + PP_0496 0.25 -2.0 585,695 + PP_0496 0.25 -0.5 585,696 - PP_0496 0.26 -0.7 585,696 - PP_0496 0.26 -0.8 585,696 - PP_0496 0.26 -0.5 585,696 - PP_0496 0.26 +0.8 585,701 + PP_0496 0.26 +0.4 585,701 + PP_0496 0.26 -1.1 585,702 - PP_0496 0.26 -0.4 585,702 - PP_0496 0.26 +0.0 585,827 + PP_0496 0.35 -0.3 585,827 + PP_0496 0.35 +0.3 585,828 - PP_0496 0.35 +0.7 586,118 + PP_0496 0.55 -0.5 586,119 - PP_0496 0.55 -0.5
Or see this region's nucleotide sequence