Strain Fitness in Pseudomonas putida KT2440 around PP_4571

Experiment: Time6-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4570 and PP_4571 are separated by 173 nucleotidesPP_4571 and PP_4572 are separated by 132 nucleotides PP_4570: PP_4570 - conserved protein of unknown function, at 5,189,330 to 5,190,265 _4570 PP_4571: PP_4571 - cysteine synthase A, at 5,190,439 to 5,191,413 _4571 PP_4572: PP_4572 - conserved exported protein of unknown function, at 5,191,546 to 5,192,619 _4572 Position (kb) 5190 5191 5192Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5189.549 kb on - strand, within PP_4570at 5189.549 kb on - strand, within PP_4570at 5189.575 kb on + strand, within PP_4570at 5189.649 kb on + strand, within PP_4570at 5189.649 kb on + strand, within PP_4570at 5189.650 kb on - strand, within PP_4570at 5189.650 kb on - strand, within PP_4570at 5189.650 kb on - strand, within PP_4570at 5189.691 kb on + strand, within PP_4570at 5189.691 kb on + strand, within PP_4570at 5189.709 kb on + strand, within PP_4570at 5189.709 kb on + strand, within PP_4570at 5189.710 kb on - strand, within PP_4570at 5189.710 kb on - strand, within PP_4570at 5189.710 kb on - strand, within PP_4570at 5189.907 kb on + strand, within PP_4570at 5189.919 kb on + strand, within PP_4570at 5189.969 kb on - strand, within PP_4570at 5189.989 kb on + strand, within PP_4570at 5189.989 kb on + strand, within PP_4570at 5189.991 kb on + strand, within PP_4570at 5189.991 kb on + strand, within PP_4570at 5189.991 kb on + strand, within PP_4570at 5189.992 kb on - strand, within PP_4570at 5189.992 kb on - strand, within PP_4570at 5189.992 kb on - strand, within PP_4570at 5189.992 kb on - strand, within PP_4570at 5189.992 kb on - strand, within PP_4570at 5190.084 kb on + strand, within PP_4570at 5190.084 kb on + strand, within PP_4570at 5190.085 kb on - strand, within PP_4570at 5190.115 kb on - strand, within PP_4570at 5190.115 kb on - strand, within PP_4570at 5190.129 kb on + strand, within PP_4570at 5190.129 kb on + strand, within PP_4570at 5190.129 kb on + strand, within PP_4570at 5190.130 kb on - strand, within PP_4570at 5190.333 kb on - strandat 5190.494 kb on + strandat 5190.521 kb on - strandat 5190.534 kb on + strandat 5190.597 kb on + strand, within PP_4571at 5190.834 kb on + strand, within PP_4571at 5190.835 kb on - strand, within PP_4571at 5190.835 kb on - strand, within PP_4571at 5190.835 kb on - strand, within PP_4571at 5190.845 kb on + strand, within PP_4571at 5190.846 kb on - strand, within PP_4571at 5190.995 kb on + strand, within PP_4571at 5190.996 kb on - strand, within PP_4571at 5190.996 kb on - strand, within PP_4571at 5190.996 kb on - strand, within PP_4571at 5190.996 kb on - strand, within PP_4571at 5190.996 kb on - strand, within PP_4571at 5191.072 kb on + strand, within PP_4571at 5191.072 kb on + strand, within PP_4571at 5191.073 kb on - strand, within PP_4571at 5191.151 kb on + strand, within PP_4571at 5191.405 kb on - strandat 5191.405 kb on - strandat 5191.458 kb on + strandat 5191.480 kb on - strandat 5191.627 kb on + strandat 5191.628 kb on - strandat 5191.643 kb on - strandat 5191.688 kb on + strand, within PP_4572at 5191.689 kb on - strand, within PP_4572at 5191.724 kb on - strand, within PP_4572at 5191.772 kb on + strand, within PP_4572at 5191.829 kb on - strand, within PP_4572at 5191.893 kb on + strand, within PP_4572at 5191.894 kb on - strand, within PP_4572at 5191.924 kb on - strand, within PP_4572at 5191.924 kb on - strand, within PP_4572at 5192.150 kb on + strand, within PP_4572at 5192.151 kb on - strand, within PP_4572at 5192.337 kb on + strand, within PP_4572at 5192.337 kb on + strand, within PP_4572at 5192.337 kb on + strand, within PP_4572at 5192.338 kb on - strand, within PP_4572at 5192.338 kb on - strand, within PP_4572at 5192.338 kb on - strand, within PP_4572at 5192.339 kb on + strand, within PP_4572at 5192.340 kb on - strand, within PP_4572at 5192.340 kb on - strand, within PP_4572at 5192.340 kb on - strand, within PP_4572

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-nophage
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5,189,549 - PP_4570 0.23 +1.0
5,189,549 - PP_4570 0.23 -0.3
5,189,575 + PP_4570 0.26 -0.0
5,189,649 + PP_4570 0.34 -0.7
5,189,649 + PP_4570 0.34 -0.1
5,189,650 - PP_4570 0.34 -0.1
5,189,650 - PP_4570 0.34 -0.5
5,189,650 - PP_4570 0.34 +0.9
5,189,691 + PP_4570 0.39 -0.6
5,189,691 + PP_4570 0.39 -0.4
5,189,709 + PP_4570 0.40 -1.7
5,189,709 + PP_4570 0.40 -0.3
5,189,710 - PP_4570 0.41 -0.2
5,189,710 - PP_4570 0.41 +0.3
5,189,710 - PP_4570 0.41 +0.2
5,189,907 + PP_4570 0.62 -0.1
5,189,919 + PP_4570 0.63 +0.5
5,189,969 - PP_4570 0.68 -1.3
5,189,989 + PP_4570 0.70 +0.1
5,189,989 + PP_4570 0.70 -0.8
5,189,991 + PP_4570 0.71 -0.4
5,189,991 + PP_4570 0.71 -0.3
5,189,991 + PP_4570 0.71 -0.6
5,189,992 - PP_4570 0.71 +0.1
5,189,992 - PP_4570 0.71 -0.1
5,189,992 - PP_4570 0.71 -0.5
5,189,992 - PP_4570 0.71 -0.0
5,189,992 - PP_4570 0.71 -1.3
5,190,084 + PP_4570 0.81 -0.9
5,190,084 + PP_4570 0.81 -1.3
5,190,085 - PP_4570 0.81 +0.2
5,190,115 - PP_4570 0.84 -0.4
5,190,115 - PP_4570 0.84 -0.4
5,190,129 + PP_4570 0.85 +1.2
5,190,129 + PP_4570 0.85 -2.4
5,190,129 + PP_4570 0.85 -1.6
5,190,130 - PP_4570 0.85 -0.8
5,190,333 - -1.0
5,190,494 + -0.0
5,190,521 - +0.8
5,190,534 + -1.0
5,190,597 + PP_4571 0.16 -0.6
5,190,834 + PP_4571 0.41 -0.3
5,190,835 - PP_4571 0.41 +0.3
5,190,835 - PP_4571 0.41 +0.9
5,190,835 - PP_4571 0.41 -0.9
5,190,845 + PP_4571 0.42 +0.4
5,190,846 - PP_4571 0.42 -0.0
5,190,995 + PP_4571 0.57 +0.4
5,190,996 - PP_4571 0.57 -0.8
5,190,996 - PP_4571 0.57 +1.5
5,190,996 - PP_4571 0.57 -1.6
5,190,996 - PP_4571 0.57 -0.2
5,190,996 - PP_4571 0.57 -0.1
5,191,072 + PP_4571 0.65 +1.1
5,191,072 + PP_4571 0.65 -0.7
5,191,073 - PP_4571 0.65 +0.5
5,191,151 + PP_4571 0.73 +0.1
5,191,405 - +0.5
5,191,405 - +3.5
5,191,458 + -1.9
5,191,480 - +0.2
5,191,627 + -0.6
5,191,628 - -0.5
5,191,643 - -1.2
5,191,688 + PP_4572 0.13 -0.7
5,191,689 - PP_4572 0.13 -0.5
5,191,724 - PP_4572 0.17 +0.2
5,191,772 + PP_4572 0.21 +0.6
5,191,829 - PP_4572 0.26 -0.3
5,191,893 + PP_4572 0.32 +0.2
5,191,894 - PP_4572 0.32 +1.2
5,191,924 - PP_4572 0.35 +0.3
5,191,924 - PP_4572 0.35 -0.2
5,192,150 + PP_4572 0.56 +0.2
5,192,151 - PP_4572 0.56 +0.5
5,192,337 + PP_4572 0.74 -0.0
5,192,337 + PP_4572 0.74 +0.2
5,192,337 + PP_4572 0.74 -0.2
5,192,338 - PP_4572 0.74 +0.5
5,192,338 - PP_4572 0.74 +0.6
5,192,338 - PP_4572 0.74 +0.1
5,192,339 + PP_4572 0.74 -0.5
5,192,340 - PP_4572 0.74 +0.4
5,192,340 - PP_4572 0.74 +0.3
5,192,340 - PP_4572 0.74 -0.4

Or see this region's nucleotide sequence