Strain Fitness in Pseudomonas putida KT2440 around PP_4611

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2
5,232,215	+		PP_4610	0.70	+0.1
5,232,216	-		PP_4610	0.70	+1.1
5,232,317	-		PP_4610	0.76	-0.1
5,232,502	+		PP_4610	0.88	-0.3
5,232,503	-		PP_4610	0.88	+1.6
5,232,524	+		PP_4610	0.89	+0.0
5,232,525	-		PP_4610	0.89	+0.1
5,232,816	+		PP_5699	0.41	+0.4
5,232,886	+		PP_5699	0.63	+0.5
5,232,886	+		PP_5699	0.63	+0.3
5,232,887	-		PP_5699	0.64	-0.2
5,232,887	-		PP_5699	0.64	-0.1
5,232,887	-		PP_5699	0.64	+0.0
5,232,887	-		PP_5699	0.64	-1.0
5,232,915	+		PP_5699	0.73	+0.1
5,232,916	-		PP_5699	0.73	-0.2
5,232,964	-		PP_5699	0.89	+0.8
5,233,148	+				+0.5
5,233,148	+				-0.1
5,233,149	-				+0.3
5,233,169	+				-0.6
5,233,169	+				+0.3
5,233,170	-				+0.2
5,233,191	+		PP_4611	0.11	-0.0
5,233,278	+		PP_4611	0.27	+0.2
5,233,278	+		PP_4611	0.27	+0.1
5,233,278	+		PP_4611	0.27	-0.4
5,233,278	+		PP_4611	0.27	-0.3
5,233,278	+		PP_4611	0.27	+0.3
5,233,279	-		PP_4611	0.28	+0.0
5,233,279	-		PP_4611	0.28	-0.2
5,233,279	-		PP_4611	0.28	+0.4
5,233,279	-		PP_4611	0.28	-0.0
5,233,279	-		PP_4611	0.28	+0.2
5,233,279	-		PP_4611	0.28	+0.1
5,233,357	+		PP_4611	0.43	+0.2
5,233,358	-		PP_4611	0.43	-0.5
5,233,365	-		PP_4611	0.44	-0.6
5,233,398	+		PP_4611	0.51	-0.2
5,233,477	+		PP_4611	0.66	-0.2
5,233,478	-		PP_4611	0.66	+0.9
5,233,587	+		PP_4611	0.88	+0.3
5,234,145	+		PP_4612	0.54	-0.5
5,234,145	+		PP_4612	0.54	+0.3
5,234,145	+		PP_4612	0.54	+0.3
5,234,145	+				+2.3
5,234,145	+		PP_4612	0.54	-0.0
5,234,145	+		PP_4612	0.54	-0.1
5,234,146	-		PP_4612	0.54	+0.7
5,234,149	+		PP_4612	0.54	-0.1
5,234,149	+		PP_4612	0.54	+0.0
5,234,149	+		PP_4612	0.54	+0.3
5,234,150	-		PP_4612	0.54	-0.4
5,234,163	+		PP_4612	0.56	+0.2
5,234,163	+		PP_4612	0.56	-0.1
5,234,163	+		PP_4612	0.56	+0.1
5,234,163	+		PP_4612	0.56	-0.2
5,234,163	+		PP_4612	0.56	-0.4
5,234,163	+		PP_4612	0.56	-0.1
5,234,163	+		PP_4612	0.56	+0.5
5,234,163	+		PP_4612	0.56	-0.1
5,234,163	+		PP_4612	0.56	+0.5
5,234,164	-		PP_4612	0.56	-0.5
5,234,164	-		PP_4612	0.56	-0.1
5,234,164	-		PP_4612	0.56	-0.4
5,234,164	-		PP_4612	0.56	-0.2
5,234,164	-		PP_4612	0.56	+0.4
5,234,164	-		PP_4612	0.56	+0.1
5,234,168	+		PP_4612	0.56	-0.1
5,234,168	+		PP_4612	0.56	-0.4
5,234,169	-		PP_4612	0.56	+0.7
5,234,169	-		PP_4612	0.56	+0.4
5,234,169	-		PP_4612	0.56	-0.5
5,234,193	+		PP_4612	0.59	+0.2
5,234,210	+		PP_4612	0.61	-0.5
5,234,211	-		PP_4612	0.61	+0.1
5,234,211	-		PP_4612	0.61	+0.2
5,234,212	+		PP_4612	0.61	-0.1
5,234,213	-		PP_4612	0.61	-0.3
5,234,463	-		PP_4612	0.88	-0.6
5,234,571	-				+0.4
5,234,571	-				-0.6