Strain Fitness in Pseudomonas putida KT2440 around PP_1007

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2
1,147,288	-		PP_1006	0.70	+0.8
1,147,288	-		PP_1006	0.70	+0.4
1,147,320	+		PP_1006	0.71	-0.3
1,147,320	+		PP_1006	0.71	+0.1
1,147,321	-		PP_1006	0.71	+0.1
1,147,321	-		PP_1006	0.71	-0.3
1,147,380	+		PP_1006	0.74	-0.8
1,147,381	-		PP_1006	0.74	+0.8
1,147,381	-		PP_1006	0.74	+0.2
1,147,401	+		PP_1006	0.74	+0.3
1,147,410	+		PP_1006	0.75	+1.2
1,147,410	+		PP_1006	0.75	+0.4
1,147,471	+		PP_1006	0.77	-0.3
1,147,485	+		PP_1006	0.78	+0.1
1,147,486	-		PP_1006	0.78	+0.4
1,147,540	-		PP_1006	0.80	-0.1
1,147,558	+		PP_1006	0.80	+0.2
1,147,558	+		PP_1006	0.80	-0.2
1,147,703	+		PP_1006	0.86	+0.5
1,147,704	-		PP_1006	0.86	+0.1
1,147,793	+		PP_1006	0.90	-0.2
1,147,793	+		PP_1006	0.90	-0.2
1,147,794	-		PP_1006	0.90	-0.2
1,147,794	-		PP_1006	0.90	-0.2
1,147,794	-		PP_1006	0.90	-0.6
1,148,283	+				+0.1
1,148,283	+				-0.4
1,148,283	+				-0.5
1,148,284	-				+0.3
1,148,287	+				+0.0
1,148,287	+				+0.6
1,148,344	-		PP_1007	0.15	+0.1
1,148,347	-		PP_1007	0.15	-0.2
1,148,354	+		PP_1007	0.16	+0.5
1,148,355	-		PP_1007	0.16	+0.6
1,148,550	-		PP_1007	0.34	-0.0
1,148,571	+		PP_1007	0.36	+0.0
1,148,571	+		PP_1007	0.36	-0.4
1,148,571	+		PP_1007	0.36	-0.5
1,148,678	+		PP_1007	0.46	+1.0
1,148,678	+		PP_1007	0.46	+0.1
1,148,678	+		PP_1007	0.46	+0.1
1,148,678	+		PP_1007	0.46	-0.1
1,148,679	-		PP_1007	0.46	-0.6
1,148,794	+		PP_1007	0.57	+0.6
1,148,795	-		PP_1007	0.57	-0.1
1,148,795	-		PP_1007	0.57	+0.9
1,148,795	-		PP_1007	0.57	+0.4
1,148,795	-		PP_1007	0.57	+0.1
1,148,956	+		PP_1007	0.73	-0.3
1,148,956	+		PP_1007	0.73	-0.5
1,148,985	+		PP_1007	0.75	+0.2
1,148,985	+		PP_1007	0.75	-0.6
1,148,986	-		PP_1007	0.75	-0.9
1,148,986	-		PP_1007	0.75	-0.2
1,148,986	-		PP_1007	0.75	-0.4
1,148,986	-		PP_1007	0.75	+0.4
1,148,986	-		PP_1007	0.75	-0.3
1,149,192	-				+0.0
1,149,344	+		PP_1008	0.20	+0.1
1,149,344	+		PP_1008	0.20	+0.1
1,149,345	-		PP_1008	0.20	+0.4
1,149,836	-				+0.4
1,150,077	+				+0.1
1,150,077	+				+0.5