Strain Fitness in Pseudomonas putida KT2440 around PP_4242

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
4,816,389	+				-0.5
4,816,452	-		PP_5669	0.11	-0.4
4,816,617	+		PP_5669	0.34	-0.3
4,816,727	-		PP_5669	0.50	+0.1
4,816,765	+		PP_5669	0.56	+0.1
4,816,783	+		PP_5669	0.58	+1.0
4,816,808	+		PP_5669	0.62	+0.1
4,816,871	-		PP_5669	0.71	+0.2
4,816,872	+		PP_5669	0.71	-0.7
4,816,872	+		PP_5669	0.71	-0.1
4,816,873	-		PP_5669	0.71	+0.2
4,816,873	-		PP_5669	0.71	-0.2
4,816,874	+		PP_5669	0.71	+0.4
4,816,922	+		PP_5669	0.78	-0.1
4,816,970	-		PP_5669	0.85	+0.1
4,817,062	-				+1.4
4,817,272	-				+0.4
4,817,275	+				-0.3
4,817,579	+		PP_4242	0.34	+0.3
4,817,579	+		PP_4242	0.34	-0.7
4,817,634	-		PP_4242	0.41	-0.1
4,817,634	-		PP_4242	0.41	-0.9
4,817,646	+		PP_4242	0.43	-1.0
4,817,647	-		PP_4242	0.43	-1.1
4,817,651	-		PP_4242	0.44	-0.4
4,817,651	-		PP_4242	0.44	-0.9
4,817,681	+		PP_4242	0.47	-0.2
4,817,682	-		PP_4242	0.47	-0.5
4,817,706	+		PP_4242	0.50	-0.5
4,817,707	-		PP_4242	0.51	+0.1
4,817,770	-		PP_4242	0.58	-0.8
4,817,912	+		PP_4242	0.76	-1.2
4,817,913	-		PP_4242	0.76	-0.5
4,817,923	+		PP_4242	0.78	+0.2
4,817,973	-		PP_4242	0.84	-0.1
4,818,033	+				+0.2
4,818,045	-				+0.1
4,818,074	+				-0.5
4,818,075	-				+0.9
4,818,095	-				-1.5
4,818,098	-				-0.5
4,818,103	+				+0.4
4,818,317	+				-0.2
4,818,317	+				+0.3
4,818,317	+				-0.7
4,818,318	-				-0.6
4,818,318	-				-0.4
4,818,318	-				-0.4
4,818,318	-				-0.7
4,818,321	+				-1.2
4,818,321	+				+0.2
4,818,383	+				-0.0
4,818,383	+				+0.7
4,818,384	-				-0.8
4,818,496	+				-0.4
4,818,651	+				-1.1
4,818,651	+				-0.3
4,818,652	-				+0.3
4,818,652	-				-0.4
4,818,652	-				-0.5
4,818,735	+				-0.1
4,818,883	-				+0.1
4,818,925	+				+0.3
4,818,930	+				-1.2
4,818,931	-				-0.0
4,819,002	+				-0.1
4,819,002	+				-0.2
4,819,002	+				-0.0
4,819,013	+				-0.2
4,819,014	-				+0.7
4,819,086	+				-0.3
4,819,086	+				-0.5
4,819,086	+				-0.5
4,819,087	-				-0.4