Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4162 and PP_4163 are separated by 12 nucleotides PP_4163 and PP_4164 are separated by 109 nucleotides PP_4164 and PP_4165 overlap by 4 nucleotides PP_4165 and PP_4166 are separated by 17 nucleotides
PP_4162: PP_4162 - conserved membrane protein of unknown function, at 4,705,439 to 4,706,491
_4162
PP_4163: PP_4163 - conserved exported protein of unknown function, at 4,706,504 to 4,707,298
_4163
PP_4164: PP_4164 - Alpha/beta hydrolase, at 4,707,408 to 4,708,262
_4164
PP_4165: PP_4165 - conserved protein of unknown function, at 4,708,259 to 4,709,122
_4165
PP_4166: PP_4166 - conserved protein of unknown function, at 4,709,140 to 4,709,514
_4166
Position (kb) 4707
4708
4709 Strain fitness (log2 ratio) -1
0
1 at 4706.672 kb on + strand, within PP_4163 at 4706.706 kb on + strand, within PP_4163 at 4706.747 kb on - strand, within PP_4163 at 4706.809 kb on - strand, within PP_4163 at 4706.809 kb on - strand, within PP_4163 at 4706.839 kb on - strand, within PP_4163 at 4706.839 kb on - strand, within PP_4163 at 4707.009 kb on - strand, within PP_4163 at 4707.050 kb on - strand, within PP_4163 at 4707.069 kb on + strand, within PP_4163 at 4707.434 kb on + strand at 4707.434 kb on + strand at 4707.601 kb on + strand, within PP_4164 at 4707.601 kb on + strand, within PP_4164 at 4707.602 kb on - strand, within PP_4164 at 4707.602 kb on - strand, within PP_4164 at 4707.673 kb on + strand, within PP_4164 at 4707.674 kb on - strand, within PP_4164 at 4707.785 kb on - strand, within PP_4164 at 4708.024 kb on + strand, within PP_4164 at 4708.025 kb on - strand, within PP_4164 at 4708.069 kb on + strand, within PP_4164 at 4708.104 kb on + strand, within PP_4164 at 4708.104 kb on + strand, within PP_4164 at 4708.105 kb on - strand, within PP_4164 at 4708.105 kb on - strand, within PP_4164 at 4708.220 kb on + strand at 4708.347 kb on - strand, within PP_4165 at 4708.357 kb on - strand, within PP_4165 at 4708.357 kb on - strand, within PP_4165 at 4708.372 kb on + strand, within PP_4165 at 4708.372 kb on + strand, within PP_4165 at 4708.491 kb on + strand, within PP_4165 at 4708.492 kb on - strand, within PP_4165 at 4708.563 kb on - strand, within PP_4165 at 4708.566 kb on + strand, within PP_4165 at 4708.566 kb on + strand, within PP_4165 at 4708.566 kb on + strand, within PP_4165 at 4708.566 kb on + strand, within PP_4165 at 4708.566 kb on + strand, within PP_4165 at 4708.567 kb on - strand, within PP_4165 at 4708.620 kb on + strand, within PP_4165 at 4708.783 kb on - strand, within PP_4165 at 4708.962 kb on + strand, within PP_4165 at 4708.963 kb on - strand, within PP_4165 at 4708.995 kb on + strand, within PP_4165 at 4708.995 kb on + strand, within PP_4165 at 4708.996 kb on - strand, within PP_4165 at 4709.113 kb on + strand at 4709.113 kb on + strand at 4709.193 kb on - strand, within PP_4166 at 4709.240 kb on + strand, within PP_4166 at 4709.240 kb on + strand, within PP_4166
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1 remove 4,706,672 + PP_4163 0.21 -0.0 4,706,706 + PP_4163 0.25 +0.7 4,706,747 - PP_4163 0.31 -0.1 4,706,809 - PP_4163 0.38 +0.1 4,706,809 - PP_4163 0.38 -0.4 4,706,839 - PP_4163 0.42 -0.2 4,706,839 - PP_4163 0.42 +0.3 4,707,009 - PP_4163 0.64 -0.5 4,707,050 - PP_4163 0.69 -0.0 4,707,069 + PP_4163 0.71 -0.3 4,707,434 + -0.6 4,707,434 + -0.2 4,707,601 + PP_4164 0.23 -0.2 4,707,601 + PP_4164 0.23 -0.0 4,707,602 - PP_4164 0.23 -0.8 4,707,602 - PP_4164 0.23 -0.1 4,707,673 + PP_4164 0.31 -0.1 4,707,674 - PP_4164 0.31 -0.0 4,707,785 - PP_4164 0.44 -0.2 4,708,024 + PP_4164 0.72 -0.2 4,708,025 - PP_4164 0.72 +0.5 4,708,069 + PP_4164 0.77 -0.1 4,708,104 + PP_4164 0.81 -0.0 4,708,104 + PP_4164 0.81 +0.0 4,708,105 - PP_4164 0.82 +0.5 4,708,105 - PP_4164 0.82 +0.1 4,708,220 + +0.1 4,708,347 - PP_4165 0.10 -0.2 4,708,357 - PP_4165 0.11 -0.1 4,708,357 - PP_4165 0.11 -0.1 4,708,372 + PP_4165 0.13 +0.2 4,708,372 + PP_4165 0.13 +0.2 4,708,491 + PP_4165 0.27 +0.1 4,708,492 - PP_4165 0.27 +0.3 4,708,563 - PP_4165 0.35 -0.6 4,708,566 + PP_4165 0.36 -0.6 4,708,566 + PP_4165 0.36 -0.2 4,708,566 + PP_4165 0.36 +0.5 4,708,566 + PP_4165 0.36 -0.2 4,708,566 + PP_4165 0.36 +0.1 4,708,567 - PP_4165 0.36 -0.3 4,708,620 + PP_4165 0.42 +0.2 4,708,783 - PP_4165 0.61 +0.1 4,708,962 + PP_4165 0.81 -0.0 4,708,963 - PP_4165 0.81 +0.5 4,708,995 + PP_4165 0.85 +0.2 4,708,995 + PP_4165 0.85 -0.3 4,708,996 - PP_4165 0.85 +0.2 4,709,113 + +0.4 4,709,113 + -0.2 4,709,193 - PP_4166 0.14 +0.5 4,709,240 + PP_4166 0.27 +0.1 4,709,240 + PP_4166 0.27 +0.8
Or see this region's nucleotide sequence