Strain Fitness in Pseudomonas putida KT2440 around PP_3058

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
3,437,738	+				+0.1
3,437,738	+				+1.8
3,437,739	-				-0.3
3,437,751	+				-0.0
3,437,752	-				-0.0
3,437,752	-				-0.3
3,437,752	-				+0.4
3,437,752	-				-0.6
3,437,759	+				+0.2
3,437,760	-				-0.4
3,437,760	-				+0.4
3,437,760	-				+0.3
3,437,817	+				+0.6
3,437,817	+				+0.6
3,437,846	+		PP_3057	0.12	-0.5
3,437,847	-		PP_3057	0.12	-0.0
3,437,898	+		PP_3057	0.19	-0.8
3,437,898	+		PP_3057	0.19	-0.1
3,437,899	-		PP_3057	0.19	+0.4
3,437,899	-		PP_3057	0.19	+0.2
3,437,935	+		PP_3057	0.24	+0.8
3,437,937	-		PP_3057	0.24	-0.4
3,437,937	-		PP_3057	0.24	-0.4
3,437,937	-		PP_3057	0.24	+1.8
3,438,024	+		PP_3057	0.36	-0.2
3,438,025	-		PP_3057	0.36	-0.2
3,438,025	-		PP_3057	0.36	-0.4
3,438,026	+		PP_3057	0.36	+0.4
3,438,026	+		PP_3057	0.36	-0.5
3,438,027	-		PP_3057	0.36	-0.7
3,438,027	-		PP_3057	0.36	-0.3
3,438,187	+		PP_3057	0.58	-0.2
3,438,188	-		PP_3057	0.58	+0.6
3,438,188	-		PP_3057	0.58	-0.2
3,438,193	-		PP_3057	0.58	-0.6
3,438,194	+		PP_3057	0.59	+0.2
3,438,194	+		PP_3057	0.59	+0.6
3,438,195	-		PP_3057	0.59	+0.1
3,438,195	-		PP_3057	0.59	-0.9
3,438,230	-		PP_3057	0.63	-0.9
3,438,249	+		PP_3057	0.66	-0.3
3,438,249	+		PP_3057	0.66	-0.3
3,438,249	+		PP_3057	0.66	+0.0
3,438,249	+		PP_3057	0.66	+0.5
3,438,249	+		PP_3057	0.66	+0.2
3,438,249	+		PP_3057	0.66	-0.7
3,438,249	+		PP_3057	0.66	-0.4
3,438,249	+		PP_3057	0.66	-0.0
3,438,249	+		PP_3057	0.66	-0.4
3,438,250	-		PP_3057	0.66	+0.2
3,438,250	-		PP_3057	0.66	+0.0
3,438,250	-		PP_3057	0.66	+0.0
3,438,252	+		PP_3057	0.66	-0.1
3,438,252	+		PP_3057	0.66	-0.0
3,438,253	-		PP_3057	0.67	-0.4
3,438,293	+		PP_3057	0.72	-0.7
3,438,310	-		PP_3057	0.74	-0.2
3,438,485	+				-0.6
3,438,485	+				-0.2
3,438,486	-				-0.2
3,438,486	-				-0.4
3,438,519	-				+0.4
3,438,551	-				+0.5
3,438,565	+				-0.2
3,438,565	+				-0.2
3,438,566	-				-0.9
3,438,670	-		PP_3058	0.32	-0.6
3,438,750	-		PP_3058	0.49	-0.0
3,438,750	-		PP_3058	0.49	-0.2
3,438,850	+		PP_3058	0.71	+0.1
3,438,850	+		PP_3058	0.71	+0.1
3,438,850	+		PP_3058	0.71	-0.2
3,438,850	+				-0.1
3,438,851	-		PP_3058	0.71	+0.4
3,438,851	-		PP_3058	0.71	-0.3
3,438,924	+		PP_3058	0.87	-0.0
3,438,924	+		PP_3058	0.87	-0.0
3,439,066	-				-0.2
3,439,218	+		PP_3059	0.12	-0.6
3,439,219	-		PP_3059	0.12	-1.0
3,439,219	-		PP_3059	0.12	+0.5
3,439,219	-		PP_3059	0.12	-0.8
3,439,299	-		PP_3059	0.19	-0.3
3,439,617	-		PP_3059	0.46	-0.0
3,439,617	-		PP_3059	0.46	-0.4
3,439,617	-		PP_3059	0.46	+0.9
3,439,617	-		PP_3059	0.46	+0.5
3,439,724	+		PP_3059	0.55	-0.3
3,439,843	+		PP_3059	0.65	+0.2