Strain Fitness in Pseudomonas putida KT2440 around PP_5233

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1
5,965,558	+				+0.1
5,965,558	+				+0.4
5,965,558	+				-0.5
5,965,622	-				+0.1
5,965,622	-				+0.6
5,965,767	+		PP_5232	0.50	+0.4
5,965,767	+		PP_5232	0.50	-0.3
5,965,936	+				+0.1
5,965,936	+				+0.5
5,965,937	-				+0.5
5,965,937	-				-0.1
5,965,937	-				+0.3
5,965,968	+				+0.4
5,965,969	-				-0.6
5,965,969	-				-0.3
5,966,025	+				-0.5
5,966,026	-				-0.8
5,966,109	-				-0.2
5,966,130	-				+1.4
5,966,141	+				+0.1
5,966,142	-				+0.1
5,966,142	-				-1.2
5,966,198	+				+0.1
5,966,199	-				+1.6
5,966,228	+				+0.2
5,966,229	-				+0.6
5,966,229	-				-0.2
5,966,247	-				-0.2
5,966,260	-				+0.9
5,966,260	-				+0.2
5,966,280	-				+0.5
5,966,362	+				+0.4
5,966,362	+				+0.3
5,966,363	-				+0.1
5,966,363	-				-0.2
5,966,363	-				-0.1
5,966,470	+				+0.4
5,966,470	+				+0.2
5,966,470	+				-0.1
5,966,471	-				+1.7
5,966,471	-				+0.3
5,966,471	-				-0.5
5,966,583	+		PP_5233	0.17	+0.2
5,966,584	-		PP_5233	0.17	-0.9
5,966,689	+		PP_5233	0.25	+0.1
5,966,900	+		PP_5233	0.40	+0.5
5,967,033	+		PP_5233	0.50	+0.5
5,967,033	+		PP_5233	0.50	+0.0
5,967,034	-		PP_5233	0.51	-0.0
5,967,034	-		PP_5233	0.51	+1.4
5,967,034	-				+2.6
5,967,163	+		PP_5233	0.60	+1.0
5,967,163	+		PP_5233	0.60	+1.0
5,967,163	+		PP_5233	0.60	+0.0
5,967,163	+		PP_5233	0.60	+0.2
5,967,164	-		PP_5233	0.60	-0.1
5,967,164	-		PP_5233	0.60	-0.2
5,967,164	-		PP_5233	0.60	-0.3
5,967,192	+		PP_5233	0.62	-0.2
5,967,192	+		PP_5233	0.62	-0.7
5,967,192	+		PP_5233	0.62	+0.8
5,967,192	+		PP_5233	0.62	-0.3
5,967,192	+		PP_5233	0.62	-0.1
5,967,433	+		PP_5233	0.80	-0.2
5,967,523	+		PP_5233	0.87	-0.2
5,967,523	+		PP_5233	0.87	+0.5
5,967,524	-		PP_5233	0.87	+0.1
5,967,524	-		PP_5233	0.87	-0.1
5,967,545	+		PP_5233	0.89	-1.4
5,967,546	-		PP_5233	0.89	-0.6
5,967,602	+				+0.3
5,967,603	-				-0.3
5,967,645	+				-0.3
5,967,645	+				-0.4
5,967,657	+				-0.1
5,967,658	-				-0.2
5,967,666	+				-0.6
5,967,667	-				+0.1
5,967,667	-				-0.2
5,967,740	+				-0.4
5,967,740	+				-0.3
5,967,740	+				-0.7
5,967,740	+				-0.2
5,967,740	+				-0.0
5,967,741	-				+1.1
5,967,741	-				-0.6
5,967,741	-				-0.6
5,968,135	-				-0.1
5,968,228	-				+0.1
5,968,283	+		PP_5723	0.20	+0.3
5,968,283	+		PP_5723	0.20	-0.6
5,968,284	-				+3.6
5,968,284	-		PP_5723	0.20	-0.2
5,968,470	+		PP_5723	0.72	-0.2
5,968,471	-		PP_5723	0.72	-0.2
5,968,471	-		PP_5723	0.72	-0.4
5,968,557	+				+0.0
5,968,557	+				-0.2