Strain Fitness in Pseudomonas putida KT2440 around PP_5160

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1
5,884,382	+		PP_5158	0.71	+0.2
5,884,382	+		PP_5158	0.71	-0.7
5,884,383	-		PP_5158	0.71	-0.8
5,884,383	-		PP_5158	0.71	+0.5
5,884,465	-		PP_5158	0.87	-0.4
5,884,585	-		PP_5159	0.11	+0.1
5,884,614	+		PP_5159	0.16	+0.1
5,884,614	+		PP_5159	0.16	-0.4
5,884,615	-		PP_5159	0.16	+0.1
5,884,717	+		PP_5159	0.32	-1.1
5,884,717	+		PP_5159	0.32	-0.9
5,884,778	-		PP_5159	0.42	+0.5
5,884,795	+		PP_5159	0.45	-0.6
5,884,796	-		PP_5159	0.45	-1.1
5,884,962	-		PP_5159	0.72	-1.1
5,885,131	-				-0.0
5,885,131	-				+0.1
5,885,131	-				-0.6
5,885,150	+				-0.1
5,885,150	+				-0.4
5,885,150	+				-0.2
5,885,150	+				+0.9
5,885,150	+				+0.2
5,885,151	-				+0.2
5,885,203	-				+0.5
5,885,203	-				-0.5
5,885,235	+				+0.1
5,885,235	+				+0.3
5,885,235	+				-1.2
5,885,336	+				+0.1
5,885,336	+				-0.1
5,885,336	+				-0.1
5,885,336	+				-0.5
5,885,336	+				+0.2
5,885,336	+				-0.1
5,885,337	-		PP_5160	0.10	+0.2
5,885,337	-		PP_5160	0.10	+0.0
5,885,337	-		PP_5160	0.10	+0.0
5,885,337	-		PP_5160	0.10	-0.9
5,885,337	-		PP_5160	0.10	-0.2
5,885,338	+		PP_5160	0.10	+0.1
5,885,338	+		PP_5160	0.10	+0.5
5,885,339	-		PP_5160	0.10	+0.0
5,885,339	-		PP_5160	0.10	+0.0
5,885,405	+		PP_5160	0.19	+0.3
5,885,433	-				+1.0
5,885,867	+		PP_5160	0.80	+0.2
5,885,867	+		PP_5160	0.80	-0.4
5,885,867	+		PP_5160	0.80	-0.6
5,885,867	+		PP_5160	0.80	-0.1
5,885,867	+		PP_5160	0.80	+0.7
5,885,868	-		PP_5160	0.81	+0.1
5,885,868	-		PP_5160	0.81	-0.4
5,885,873	+		PP_5160	0.81	-1.4
5,885,942	+				+0.5
5,885,942	+				-0.6
5,885,942	+				-0.3
5,885,943	-				-0.2
5,885,967	+				-0.4
5,885,967	+				-0.2
5,885,967	+				-0.7
5,886,046	-				-0.7
5,886,382	-		PP_5161	0.37	-0.5
5,886,585	+		PP_5161	0.57	-0.3
5,886,717	+		PP_5161	0.70	+0.4
5,886,717	+		PP_5161	0.70	+0.2
5,886,718	-		PP_5161	0.70	-0.3
5,886,840	+		PP_5161	0.82	-0.4
5,886,841	-		PP_5161	0.83	+0.4
5,886,945	+				+0.3
5,886,946	-				-0.4
5,886,966	-				-0.7
5,886,966	-				+0.3
5,886,966	-				+1.6