Strain Fitness in Pseudomonas putida KT2440 around PP_4766

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1
5,425,859	+		PP_4765	0.32	-0.7
5,425,860	-		PP_4765	0.32	-0.0
5,425,864	-		PP_4765	0.32	+0.2
5,426,044	-		PP_4765	0.47	-0.5
5,426,044	-		PP_4765	0.47	-0.0
5,426,100	-		PP_4765	0.51	+0.5
5,426,218	+		PP_4765	0.61	+0.1
5,426,218	+		PP_4765	0.61	-0.4
5,426,218	+		PP_4765	0.61	+0.3
5,426,218	+		PP_4765	0.61	-0.3
5,426,218	+		PP_4765	0.61	-0.5
5,426,218	+		PP_4765	0.61	-1.4
5,426,218	+		PP_4765	0.61	-0.1
5,426,218	+		PP_4765	0.61	-0.3
5,426,219	-		PP_4765	0.61	-1.0
5,426,219	-		PP_4765	0.61	-1.6
5,426,219	-		PP_4765	0.61	+0.4
5,426,219	-		PP_4765	0.61	-0.0
5,426,486	+		PP_4765	0.82	-0.5
5,426,486	+		PP_4765	0.82	+0.2
5,426,780	-				+0.7
5,426,819	+				-0.2
5,426,819	+				-0.2
5,426,819	+				-0.1
5,426,819	+				+0.1
5,426,820	-				-0.5
5,426,932	+		PP_4766	0.12	+0.3
5,427,121	-				+0.6
5,427,121	-		PP_4766	0.26	-0.5
5,427,121	-		PP_4766	0.26	+1.0
5,427,121	-		PP_4766	0.26	-0.1
5,427,176	-		PP_4766	0.30	-0.2
5,427,484	+		PP_4766	0.54	-0.9
5,427,586	-		PP_4766	0.61	+0.1
5,427,763	+		PP_4766	0.74	-1.1
5,427,777	+		PP_4766	0.76	-0.6
5,427,777	+		PP_4766	0.76	+0.3
5,427,786	+		PP_4766	0.76	-0.5
5,427,786	+		PP_4766	0.76	+0.4
5,427,786	+		PP_4766	0.76	+0.1
5,427,787	-		PP_4766	0.76	-0.6
5,427,790	+		PP_4766	0.77	-0.6
5,427,790	+		PP_4766	0.77	-0.3
5,427,860	+		PP_4766	0.82	-0.2
5,428,042	-				+0.4
5,428,042	-				-0.4
5,428,108	+				-0.3
5,428,108	+				-0.0
5,428,109	-				-0.4
5,428,109	-				+1.4
5,428,109	-				-0.4
5,428,159	+				+0.0
5,428,159	+				+0.1
5,428,188	+				-0.3
5,428,188	+				+0.1
5,428,305	+		PP_4767	0.16	+0.6
5,428,333	+		PP_4767	0.19	-0.3
5,428,334	-		PP_4767	0.19	-0.2
5,428,339	+		PP_4767	0.20	+0.9
5,428,339	+		PP_4767	0.20	-0.6
5,428,340	-		PP_4767	0.20	+0.1
5,428,340	-		PP_4767	0.20	+0.4
5,428,378	+		PP_4767	0.24	+0.0
5,428,378	+		PP_4767	0.24	+0.7
5,428,378	+		PP_4767	0.24	+0.2
5,428,378	+		PP_4767	0.24	-1.4
5,428,378	+		PP_4767	0.24	-0.4
5,428,378	+		PP_4767	0.24	+0.7
5,428,378	+		PP_4767	0.24	-0.6
5,428,379	-		PP_4767	0.24	-0.0
5,428,379	-		PP_4767	0.24	-0.6
5,428,379	-		PP_4767	0.24	-0.2
5,428,384	+		PP_4767	0.25	+0.1
5,428,384	+		PP_4767	0.25	-0.2
5,428,384	+		PP_4767	0.25	-0.7
5,428,385	-		PP_4767	0.25	-0.6
5,428,385	-		PP_4767	0.25	+0.0
5,428,884	-		PP_4767	0.79	-0.8
5,428,884	-		PP_4767	0.79	-0.5
5,428,918	+		PP_4767	0.83	+0.6
5,428,919	-		PP_4767	0.83	-0.9
5,429,002	+				-0.3
5,429,003	-				-0.1
5,429,003	-				+0.3
5,429,003	-				+0.7
5,429,006	+				+0.1
5,429,006	+				-0.2
5,429,006	+				-0.2
5,429,006	+				-0.4
5,429,006	+				-0.1
5,429,006	+				+0.1
5,429,006	+				+0.2
5,429,007	-				-0.6
5,429,007	-				-0.7
5,429,023	+				+0.4
5,429,024	-				-0.2
5,429,024	-				-0.1