Strain Fitness in Pseudomonas putida KT2440 around PP_4451

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1
5,047,357	+				-0.6
5,047,357	+				+0.3
5,047,358	-				-0.0
5,047,358	-				-0.3
5,047,414	+				-0.4
5,047,433	+				+0.7
5,047,433	+				+0.8
5,047,433	+				+0.2
5,047,433	+				-0.2
5,047,433	+				+0.6
5,047,433	+				-0.1
5,047,434	-				+0.5
5,047,434	-				+2.1
5,047,434	-				-0.6
5,047,434	-				+0.0
5,047,434	-				-0.3
5,047,434	-				+0.3
5,047,510	+		PP_5684	0.20	-0.1
5,047,510	+		PP_5684	0.20	-0.1
5,047,511	-		PP_5684	0.21	-0.3
5,047,511	-		PP_5684	0.21	-0.8
5,047,518	+		PP_5684	0.24	-1.3
5,047,518	+		PP_5684	0.24	-0.9
5,047,519	-		PP_5684	0.24	-0.6
5,047,630	+				+1.5
5,047,630	+		PP_5684	0.77	-0.6
5,047,630	+		PP_5684	0.77	-0.8
5,047,630	+		PP_5684	0.77	-0.2
5,047,631	-		PP_5684	0.77	+0.2
5,047,631	-		PP_5684	0.77	-1.2
5,047,631	-		PP_5684	0.77	-1.5
5,047,631	-				+0.0
5,047,631	-		PP_5684	0.77	-0.8
5,047,789	-		PP_5685	0.43	-0.7
5,047,814	+		PP_5685	0.53	+0.0
5,047,814	+		PP_5685	0.53	-0.2
5,047,815	-		PP_5685	0.53	-0.3
5,047,815	-		PP_5685	0.53	+0.6
5,047,825	-		PP_5685	0.57	-0.0
5,047,825	-		PP_5685	0.57	-0.2
5,047,844	+		PP_5685	0.65	-0.2
5,047,845	-		PP_5685	0.65	+0.5
5,047,868	+		PP_5685	0.75	+0.1
5,047,880	+		PP_5685	0.80	-0.6
5,047,880	+		PP_5685	0.80	+0.0
5,047,881	-		PP_5685	0.80	-1.0
5,047,893	+		PP_5685	0.85	+0.1
5,047,893	+		PP_5685	0.85	-1.0
5,047,922	+				+0.7
5,047,923	-				-0.1
5,047,946	+				+0.1
5,047,985	+				+0.2
5,047,986	-				-0.0
5,047,986	-				-0.9
5,047,986	-				-0.7
5,047,986	-				-0.2
5,047,986	-				+0.2
5,047,986	-				-0.3
5,047,986	-				+0.0
5,047,986	-				-0.8
5,047,987	+				+0.3
5,047,987	+				-0.8
5,047,987	+				-0.7
5,047,987	+				-0.5
5,047,988	-				+1.1
5,047,988	-				+1.4
5,047,988	-				-1.0
5,047,988	-				-0.5
5,047,988	-				-0.0
5,047,988	-				-0.3
5,048,042	+				-0.8
5,048,046	+				-0.2
5,048,046	+				-0.3
5,048,046	+				-0.2
5,048,046	+				-0.1
5,048,047	-				-0.1
5,048,047	-				-2.4
5,048,100	-				-0.3
5,048,197	+				-1.0
5,048,271	+				+0.9
5,048,494	-		PP_4451	0.20	+0.2
5,048,614	+		PP_4451	0.31	-0.3
5,048,672	-		PP_4451	0.37	-0.3
5,048,735	+		PP_4451	0.43	-0.8
5,048,735	+		PP_4451	0.43	-0.8
5,048,789	-		PP_4451	0.48	-1.1
5,049,003	-		PP_4451	0.67	-0.4
5,049,237	-		PP_4451	0.89	-0.8
5,049,579	+				-0.3
5,049,666	-				-0.6
5,049,674	+				-0.9
5,049,771	-				+0.7
5,050,092	-		PP_5686	0.49	-0.5
5,050,097	-		PP_5686	0.50	-0.4
5,050,114	-		PP_5686	0.53	-0.9
5,050,288	-		PP_5686	0.80	-0.9
5,050,288	-		PP_5686	0.80	-0.4