Strain Fitness in Pseudomonas putida KT2440 around PP_2455

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1
2,800,622	-				+0.5
2,801,052	+		PP_2454	0.41	-0.5
2,801,123	+		PP_2454	0.48	+0.5
2,801,123	+		PP_2454	0.48	-0.9
2,801,167	+		PP_2454	0.53	+0.6
2,801,168	-		PP_2454	0.53	-0.4
2,801,322	-		PP_2454	0.69	+0.8
2,801,513	+		PP_2454	0.89	+0.2
2,801,513	+		PP_2454	0.89	-1.6
2,801,514	-		PP_2454	0.89	+0.8
2,801,514	-		PP_2454	0.89	-0.5
2,801,514	-		PP_2454	0.89	+0.1
2,801,692	+				+0.5
2,801,692	+				+0.0
2,801,693	-				+0.4
2,801,782	-		PP_2455	0.10	+0.5
2,801,782	-		PP_2455	0.10	+0.3
2,801,796	+		PP_2455	0.11	+0.5
2,802,235	+		PP_2455	0.39	-1.4
2,802,236	-		PP_2455	0.39	-0.0
2,802,236	-		PP_2455	0.39	-0.6
2,802,236	-		PP_2455	0.39	+0.4
2,802,237	+		PP_2455	0.39	-0.2
2,802,238	-		PP_2455	0.39	-0.6
2,802,332	-		PP_2455	0.45	-0.2
2,802,332	-				+0.3
2,802,384	+		PP_2455	0.49	-0.3
2,802,384	+		PP_2455	0.49	-0.2
2,802,385	-		PP_2455	0.49	-0.5
2,802,547	+		PP_2455	0.59	-0.9
2,802,548	-		PP_2455	0.59	-0.3
2,802,548	-		PP_2455	0.59	-0.9
2,802,958	+		PP_2455	0.85	+0.2
2,802,958	+		PP_2455	0.85	-1.3
2,802,959	-		PP_2455	0.85	-1.4
2,802,959	-		PP_2455	0.85	-0.4
2,803,246	-				-0.7
2,803,263	+				+0.4
2,803,264	-				+0.1
2,803,264	-				+1.0
2,803,335	+		PP_2456	0.15	+0.4
2,803,336	-		PP_2456	0.15	+0.3
2,803,636	-		PP_2456	0.45	+2.0
2,803,662	+		PP_2456	0.48	+0.4
2,803,662	+		PP_2456	0.48	-0.5
2,803,662	+		PP_2456	0.48	+0.5
2,803,663	-		PP_2456	0.48	+0.1
2,803,663	-		PP_2456	0.48	+0.5
2,803,762	+		PP_2456	0.58	+0.4
2,803,851	+		PP_2456	0.67	+0.1
2,803,852	-		PP_2456	0.67	-0.3
2,804,152	-				-0.1
2,804,156	+				-0.6