Strain Fitness in Pseudomonas putida KT2440 around PP_1961

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1
2,220,798	-		PP_1960	0.37	+0.3
2,220,798	-		PP_1960	0.37	-0.2
2,220,811	-		PP_1960	0.38	-0.6
2,220,854	+		PP_1960	0.42	-0.1
2,220,858	-		PP_1960	0.42	-1.4
2,220,871	+		PP_1960	0.43	+0.3
2,220,926	+		PP_1960	0.47	-0.2
2,220,958	+		PP_1960	0.50	-1.1
2,221,069	-		PP_1960	0.58	-0.4
2,221,159	+		PP_1960	0.65	-0.2
2,221,167	+		PP_1960	0.65	-0.5
2,221,273	-		PP_1960	0.73	-1.0
2,221,384	+		PP_1960	0.82	+0.5
2,221,400	-		PP_1960	0.83	+1.3
2,221,437	+		PP_1960	0.86	-0.3
2,221,446	+		PP_1960	0.86	+0.1
2,221,447	-		PP_1960	0.86	-0.7
2,221,447	-		PP_1960	0.86	-0.9
2,221,562	-				+0.2
2,221,660	-				-0.1
2,221,674	+				+0.4
2,221,783	+		PP_1961	0.16	+0.7
2,221,783	+		PP_1961	0.16	-0.2
2,221,967	+		PP_1961	0.34	-1.1
2,222,094	+		PP_1961	0.47	-0.3
2,222,173	-		PP_1961	0.55	-0.1
2,222,177	+		PP_1961	0.55	-0.2
2,222,272	-		PP_1961	0.65	-1.9
2,222,299	+		PP_1961	0.68	+0.1
2,222,299	+		PP_1961	0.68	-0.5
2,222,299	+		PP_1961	0.68	-0.5
2,222,299	+		PP_1961	0.68	-0.5
2,222,299	+		PP_1961	0.68	-1.5
2,222,300	-		PP_1961	0.68	+0.2
2,222,396	+		PP_1961	0.77	-0.8
2,222,397	-		PP_1961	0.78	-0.1
2,222,397	-		PP_1961	0.78	-0.5
2,222,445	-		PP_1961	0.82	-0.4
2,222,482	+		PP_1961	0.86	-0.2
2,222,483	-		PP_1961	0.86	-1.5
2,222,541	+				+0.6
2,222,549	+				-0.6
2,222,625	-				-0.1
2,222,772	+				+0.7
2,222,816	+		PP_1962	0.10	+0.5
2,222,827	+		PP_1962	0.11	-0.9
2,222,943	+		PP_1962	0.17	-0.7
2,222,943	+		PP_1962	0.17	-0.4
2,222,943	+		PP_1962	0.17	-0.6
2,222,943	+		PP_1962	0.17	+0.2
2,222,943	+		PP_1962	0.17	-0.7
2,222,943	+		PP_1962	0.17	-0.6
2,222,943	+		PP_1962	0.17	-0.3
2,222,970	+		PP_1962	0.18	-0.3
2,222,970	+		PP_1962	0.18	+1.4
2,223,008	+		PP_1962	0.20	-0.4
2,223,008	+		PP_1962	0.20	-0.1
2,223,020	+		PP_1962	0.21	+0.7
2,223,166	+		PP_1962	0.28	-0.3
2,223,166	+		PP_1962	0.28	-1.2
2,223,170	+		PP_1962	0.29	-0.8
2,223,170	+		PP_1962	0.29	-0.9
2,223,222	+		PP_1962	0.31	-0.6
2,223,222	+		PP_1962	0.31	-0.0
2,223,438	+		PP_1962	0.43	+0.5
2,223,451	+		PP_1962	0.43	-0.8