Strain Fitness in Pseudomonas putida KT2440 around PP_1258

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1
1,436,150	+				-0.9
1,436,150	+				-0.4
1,436,151	-				-0.0
1,436,172	-				+0.0
1,436,172	-				-1.0
1,436,186	+				-0.3
1,436,186	+				+0.0
1,436,187	-				-0.3
1,436,187	-				-0.1
1,436,237	+		PP_1257	0.13	-0.4
1,436,273	+		PP_1257	0.17	-0.2
1,436,274	-		PP_1257	0.17	-0.2
1,436,274	-		PP_1257	0.17	+0.4
1,436,274	-		PP_1257	0.17	+0.1
1,436,276	+		PP_1257	0.17	-0.5
1,436,277	-		PP_1257	0.17	+0.3
1,436,277	-		PP_1257	0.17	+0.1
1,436,277	-		PP_1257	0.17	+0.0
1,436,617	+		PP_1257	0.53	+0.1
1,436,645	+		PP_1257	0.56	+0.2
1,436,645	+		PP_1257	0.56	-1.3
1,436,645	+		PP_1257	0.56	+0.8
1,436,645	+		PP_1257	0.56	-0.1
1,436,657	+		PP_1257	0.57	-0.7
1,436,657	+		PP_1257	0.57	-0.1
1,436,657	+		PP_1257	0.57	-0.4
1,436,657	+		PP_1257	0.57	-0.5
1,436,657	+		PP_1257	0.57	-0.5
1,436,657	+		PP_1257	0.57	+1.6
1,436,658	-		PP_1257	0.57	+0.4
1,436,930	+		PP_1257	0.86	+0.2
1,436,931	-		PP_1257	0.86	+0.7
1,436,931	-		PP_1257	0.86	-0.9
1,437,168	-				-0.6
1,437,168	-				-0.6
1,437,168	-				+0.9
1,437,341	+		PP_1258	0.25	+0.6
1,437,342	-		PP_1258	0.25	+0.2
1,437,342	-		PP_1258	0.25	-0.3
1,437,342	-		PP_1258	0.25	-0.2
1,437,479	+		PP_1258	0.40	-0.3
1,437,480	-		PP_1258	0.40	+0.6
1,437,736	+		PP_1258	0.68	+0.2
1,437,737	-		PP_1258	0.68	+0.2
1,437,843	-		PP_1258	0.80	+0.1
1,437,843	-		PP_1258	0.80	+0.1
1,438,023	+				+0.2
1,438,049	+				-0.4
1,438,050	-				-0.1
1,438,085	+				+0.5
1,438,168	+				+0.5
1,438,171	+				+0.5
1,438,172	-				+0.2
1,438,172	-				-1.3
1,438,172	-				-0.1
1,438,172	-				+0.4
1,438,424	-		PP_1259	0.23	-0.0
1,438,550	-		PP_1259	0.31	-1.0
1,438,550	-		PP_1259	0.31	-0.2
1,438,724	-		PP_1259	0.41	-0.2
1,438,750	+		PP_1259	0.43	+0.4
1,438,750	+		PP_1259	0.43	+0.2
1,438,750	+		PP_1259	0.43	-0.2
1,438,750	+		PP_1259	0.43	-0.4
1,438,751	-		PP_1259	0.43	+0.2
1,438,751	-		PP_1259	0.43	-0.2
1,438,751	-		PP_1259	0.43	-0.3
1,438,751	-		PP_1259	0.43	-0.2
1,438,751	-		PP_1259	0.43	-1.0
1,438,802	-		PP_1259	0.46	+0.2