Strain Fitness in Pseudomonas putida KT2440 around PP_1238

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1
1,414,690	+				-0.1
1,414,725	+				-0.9
1,414,725	+				-1.4
1,414,725	+				-0.4
1,414,742	+				+0.3
1,414,742	+				-0.2
1,415,082	+		PP_1237	0.40	-0.3
1,415,150	+		PP_1237	0.48	-0.6
1,415,582	+				-0.9
1,415,606	-				-0.7
1,415,613	+				+0.3
1,415,623	+				-0.7
1,415,624	-				+0.9
1,415,669	+				-0.9
1,415,669	+				+0.2
1,415,739	+				+0.8
1,415,844	-		PP_1238	0.19	+0.7
1,416,142	+		PP_1238	0.46	-1.0
1,416,142	+		PP_1238	0.46	-1.4
1,416,189	+		PP_1238	0.50	+0.4
1,416,189	+		PP_1238	0.50	+0.4
1,416,189	+		PP_1238	0.50	+0.9
1,416,189	+		PP_1238	0.50	-0.2
1,416,189	+		PP_1238	0.50	-0.1
1,416,189	+		PP_1238	0.50	+1.6
1,416,189	+		PP_1238	0.50	+0.7
1,416,189	+		PP_1238	0.50	-0.3
1,416,513	+		PP_1238	0.79	-0.4
1,416,514	-		PP_1238	0.79	-0.9
1,416,514	-		PP_1238	0.79	-0.7
1,416,516	+		PP_1238	0.79	+0.9
1,416,516	+		PP_1238	0.79	+0.3
1,416,516	+		PP_1238	0.79	+2.6
1,416,516	+		PP_1238	0.79	-0.6
1,416,516	+		PP_1238	0.79	+0.8
1,416,516	+		PP_1238	0.79	-0.3
1,416,516	+		PP_1238	0.79	+0.1
1,416,751	-				+0.3
1,416,751	-				-0.4
1,416,973	+		PP_1239	0.29	+0.4
1,416,973	+		PP_1239	0.29	+0.0
1,416,981	+		PP_1239	0.30	+1.2
1,417,061	+		PP_1239	0.41	-0.4
1,417,061	+		PP_1239	0.41	+1.0
1,417,107	+		PP_1239	0.47	-0.7
1,417,176	+		PP_1239	0.56	-0.9
1,417,176	+		PP_1239	0.56	+0.5