Strain Fitness in Pseudomonas putida KT2440 around PP_0133

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1
139,949	-		PP_0132	0.69	-0.5
139,958	+		PP_0132	0.69	+0.6
139,959	-		PP_0132	0.69	+0.8
139,988	+		PP_0132	0.71	-0.5
139,989	-		PP_0132	0.71	+0.8
140,154	+		PP_0132	0.80	+0.2
140,155	-		PP_0132	0.80	-0.1
140,176	-		PP_0132	0.82	-0.5
140,389	+				+0.5
140,389	+				-0.1
140,390	-				-0.2
140,390	-				-0.5
140,390	-				+0.3
140,390	-				+0.6
140,503	+				-0.2
140,510	+				-0.6
140,511	-				-0.2
140,511	-				-0.0
140,511	-				-0.9
140,511	-				-1.2
140,511	-				+0.0
140,511	-				+0.3
140,528	+				+0.0
140,535	+				-0.6
140,535	+				-0.0
140,605	-				+0.1
140,632	-				+0.2
140,644	+		PP_0133	0.11	-0.2
140,737	+		PP_0133	0.18	+0.3
140,738	-		PP_0133	0.18	+0.5
140,774	+		PP_0133	0.20	+0.5
140,829	-		PP_0133	0.24	-0.6
140,930	+		PP_0133	0.32	-0.9
141,000	+		PP_0133	0.37	+0.1
141,000	+		PP_0133	0.37	+0.3
141,001	-		PP_0133	0.37	+0.2
141,001	-		PP_0133	0.37	-0.4
141,004	+		PP_0133	0.37	+0.2
141,004	+		PP_0133	0.37	+0.3
141,004	+		PP_0133	0.37	-0.7
141,004	+		PP_0133	0.37	+2.6
141,004	+		PP_0133	0.37	+0.2
141,004	+		PP_0133	0.37	+0.4
141,005	-		PP_0133	0.37	-0.5
141,005	-		PP_0133	0.37	-0.2
141,005	-		PP_0133	0.37	-1.5
141,005	-		PP_0133	0.37	-0.7
141,005	-		PP_0133	0.37	+0.3
141,045	-		PP_0133	0.40	-0.3
141,045	-		PP_0133	0.40	-1.8
141,119	-		PP_0133	0.46	+0.0
141,199	+		PP_0133	0.52	-0.2
141,200	-		PP_0133	0.52	-0.1
141,200	-		PP_0133	0.52	-0.6
141,396	+		PP_0133	0.67	-0.4
141,396	+		PP_0133	0.67	-0.7
141,397	-		PP_0133	0.67	-0.5
141,427	+		PP_0133	0.69	+1.2
141,428	-		PP_0133	0.69	-0.6
141,530	+		PP_0133	0.76	+0.1
141,530	+		PP_0133	0.76	+0.1
141,559	+		PP_0133	0.79	+0.2
141,559	+		PP_0133	0.79	-0.7
141,560	-		PP_0133	0.79	+0.1
141,622	-		PP_0133	0.83	+0.2
141,682	+		PP_0133	0.88	-1.2
141,682	+		PP_0133	0.88	+0.1
141,682	+		PP_0133	0.88	+0.7
141,683	-		PP_0133	0.88	+1.4
141,683	-		PP_0133	0.88	-0.4
141,683	-		PP_0133	0.88	-0.1
141,683	-		PP_0133	0.88	-0.7
141,683	-		PP_0133	0.88	+0.1
141,683	-		PP_0133	0.88	+0.3
141,683	-		PP_0133	0.88	+1.0
141,707	-		PP_0133	0.90	-0.2
141,749	+				-0.3
141,750	-				-0.6
141,874	+				-0.2
141,874	+				-1.0
141,875	-				-0.7
141,875	-				+0.5
141,875	-				-0.6
141,879	-				+0.0
141,879	-				-0.8
141,940	+				+0.1
141,962	+				-0.1
141,963	-				+0.0
141,963	-				+0.4
141,963	-				-0.6
141,991	+				-1.3
141,991	+				+0.6
141,992	-				-0.4
141,992	-				+0.4
141,992	-				+0.4
142,074	+				-0.2
142,074	+				-0.4
142,075	-				-0.1
142,111	-				-1.0
142,316	+		PP_0134	0.32	-0.5
142,317	-		PP_0134	0.32	-0.2
142,376	-		PP_0134	0.39	+0.3
142,458	+		PP_0134	0.49	-0.1
142,458	+		PP_0134	0.49	+0.1
142,458	+		PP_0134	0.49	-0.4
142,458	+		PP_0134	0.49	+0.1
142,459	-		PP_0134	0.49	+0.4
142,459	-		PP_0134	0.49	+0.1
142,459	-		PP_0134	0.49	+0.2
142,459	-		PP_0134	0.49	-2.0
142,460	+		PP_0134	0.49	-0.2
142,460	+		PP_0134	0.49	-0.7
142,460	+		PP_0134	0.49	+1.0
142,460	+		PP_0134	0.49	+0.0
142,461	-		PP_0134	0.49	-0.4
142,461	-		PP_0134	0.49	-0.0
142,461	-		PP_0134	0.49	-1.0
142,461	-		PP_0134	0.49	-1.0
142,461	-		PP_0134	0.49	-0.7
142,461	-		PP_0134	0.49	-0.5
142,461	-		PP_0134	0.49	+0.7
142,466	+		PP_0134	0.50	-1.1
142,466	+		PP_0134	0.50	-0.1
142,467	-		PP_0134	0.50	-0.4
142,564	+		PP_0134	0.62	+0.4
142,564	+		PP_0134	0.62	+0.3
142,565	-		PP_0134	0.62	+0.2
142,565	-		PP_0134	0.62	-0.1
142,565	-		PP_0134	0.62	-1.8
142,691	-		PP_0134	0.77	+0.3
142,691	-		PP_0134	0.77	+1.2