Strain Fitness in Pseudomonas putida KT2440 around PP_4881

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
5,548,815	+				-0.2
5,548,815	+				-0.6
5,548,815	+				-1.5
5,548,833	+				-1.2
5,548,837	+				-0.7
5,548,837	+				+0.1
5,548,837	+				+0.1
5,548,837	+				-0.2
5,548,837	+				-0.7
5,548,837	+				-1.3
5,549,077	+				-0.7
5,549,077	+				-1.2
5,549,077	+				-0.7
5,549,077	+				+0.0
5,549,079	+				-1.5
5,549,079	+				+1.1
5,549,079	+				+0.5
5,549,079	+				+0.8
5,549,079	+				-0.7
5,549,079	+				-1.0
5,549,079	+				-0.6
5,549,079	+				-2.0
5,549,079	+				-2.3
5,549,083	+				-0.7
5,549,150	+				+0.8
5,549,415	+				-0.4
5,549,425	+				-0.2
5,549,447	+				-0.1
5,549,447	+				-0.8
5,549,450	+				-0.7
5,549,450	+				-0.2
5,549,470	+				-0.9
5,549,492	+				-0.1
5,549,492	+				-1.5
5,549,492	+				+0.4
5,549,588	+				-1.0
5,549,601	+				-0.6
5,549,601	+				-0.1
5,549,601	+				-0.4
5,549,609	+				+0.4
5,549,635	+				+0.5
5,549,635	+				-0.0
5,549,635	+				-0.4
5,549,636	-				-0.1
5,549,636	-				-0.4
5,549,730	+				+0.6
5,549,730	+				+0.2
5,549,731	-				-0.5
5,549,731	-				+0.3
5,549,734	+				-0.0
5,549,735	-				-0.5
5,549,741	-				-0.4
5,549,752	+				-0.9
5,549,753	-				+0.0
5,549,753	-				+0.5
5,549,788	+				+0.5
5,549,867	+		PP_4881	0.11	-0.0
5,549,867	+		PP_4881	0.11	-0.1
5,549,868	-		PP_4881	0.11	-0.3
5,549,868	-		PP_4881	0.11	+1.7
5,549,868	-				-1.2
5,549,868	-		PP_4881	0.11	+0.0
5,549,868	-		PP_4881	0.11	-0.1
5,549,868	-		PP_4881	0.11	-0.4
5,549,868	-		PP_4881	0.11	-0.6
5,549,868	-		PP_4881	0.11	+0.1
5,549,868	-		PP_4881	0.11	+0.6
5,549,868	-		PP_4881	0.11	-0.4
5,549,868	-		PP_4881	0.11	-0.5
5,549,912	+		PP_4881	0.15	-0.2
5,549,912	+		PP_4881	0.15	+0.5
5,549,913	-		PP_4881	0.15	-0.4
5,549,913	-		PP_4881	0.15	+0.0
5,550,018	-		PP_4881	0.26	-0.6
5,550,018	-		PP_4881	0.26	-0.2
5,550,110	+		PP_4881	0.35	+0.0
5,550,110	+		PP_4881	0.35	-0.2
5,550,111	-		PP_4881	0.35	-0.4
5,550,167	+		PP_4881	0.40	-0.2
5,550,167	+		PP_4881	0.40	-0.6
5,550,167	+		PP_4881	0.40	+0.6
5,550,168	-		PP_4881	0.40	+1.0
5,550,168	-		PP_4881	0.40	+0.2
5,550,252	-		PP_4881	0.49	-0.1
5,550,362	+		PP_4881	0.59	-0.1
5,550,362	+		PP_4881	0.59	-1.3
5,550,362	+		PP_4881	0.59	+1.1
5,550,363	-		PP_4881	0.60	-0.5
5,550,418	-		PP_4881	0.65	+0.5
5,550,431	+		PP_4881	0.66	+0.3
5,550,431	+		PP_4881	0.66	+0.7
5,550,431	+		PP_4881	0.66	-0.2
5,550,431	+		PP_4881	0.66	+0.0
5,550,431	+		PP_4881	0.66	+0.1
5,550,432	-		PP_4881	0.66	-0.0
5,550,432	-		PP_4881	0.66	+0.4
5,550,432	-		PP_4881	0.66	+0.5
5,550,432	-		PP_4881	0.66	-0.1
5,550,432	-		PP_4881	0.66	+0.5
5,550,434	+		PP_4881	0.67	+0.1
5,550,435	-		PP_4881	0.67	-0.4
5,550,441	-		PP_4881	0.67	-0.3
5,550,485	+		PP_4881	0.72	+0.3
5,550,485	+		PP_4881	0.72	+0.5
5,550,485	+		PP_4881	0.72	+0.2
5,550,485	+		PP_4881	0.72	+0.1
5,550,485	+		PP_4881	0.72	+0.0
5,550,486	-		PP_4881	0.72	-0.2
5,550,486	-		PP_4881	0.72	-0.0
5,550,520	+		PP_4881	0.75	-0.6
5,550,521	-		PP_4881	0.75	+0.5
5,550,521	-		PP_4881	0.75	+0.3
5,550,636	-		PP_4881	0.86	-0.2
5,550,843	-				+0.3
5,550,843	-				-0.2
5,550,863	+				+0.6
5,550,863	+				+0.4
5,550,864	-				-0.6
5,550,892	+				-0.6
5,550,892	+				-0.3
5,550,893	-				-0.3
5,550,893	-				-0.5
5,550,893	-				+0.5
5,550,893	-				-0.4
5,551,146	-		PP_4882	0.24	+0.3
5,551,146	-		PP_4882	0.24	+0.0
5,551,201	+		PP_4882	0.27	+0.4
5,551,352	+		PP_4882	0.37	-0.3
5,551,368	+		PP_4882	0.38	-0.6
5,551,368	+		PP_4882	0.38	+0.1
5,551,368	+		PP_4882	0.38	-0.1
5,551,368	+		PP_4882	0.38	-0.1
5,551,368	+		PP_4882	0.38	+0.4
5,551,369	-		PP_4882	0.38	-0.0
5,551,369	-		PP_4882	0.38	+0.2
5,551,369	-		PP_4882	0.38	+0.3
5,551,369	-		PP_4882	0.38	-0.0
5,551,369	-		PP_4882	0.38	+0.4
5,551,369	-		PP_4882	0.38	-0.4
5,551,369	-		PP_4882	0.38	+0.3
5,551,429	+		PP_4882	0.42	-0.5
5,551,430	-		PP_4882	0.42	-0.4
5,551,550	+		PP_4882	0.50	-0.2
5,551,550	+		PP_4882	0.50	-0.1
5,551,551	-		PP_4882	0.50	+0.1
5,551,551	-		PP_4882	0.50	+0.1
5,551,551	-		PP_4882	0.50	+0.4
5,551,551	-		PP_4882	0.50	-0.4
5,551,551	-		PP_4882	0.50	-0.7
5,551,568	+		PP_4882	0.51	-0.1