Strain Fitness in Pseudomonas putida KT2440 around PP_3570

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
4,048,980	+		PP_3569	0.63	+0.2
4,048,981	-		PP_3569	0.63	+0.4
4,049,151	+		PP_3569	0.70	+0.3
4,049,151	+		PP_3569	0.70	-0.3
4,049,152	-		PP_3569	0.70	-0.3
4,049,164	+		PP_3569	0.71	+0.6
4,049,165	-		PP_3569	0.71	+0.3
4,049,165	-		PP_3569	0.71	-0.4
4,049,206	-		PP_3569	0.73	+1.9
4,049,206	-		PP_3569	0.73	+1.2
4,049,206	-		PP_3569	0.73	+0.8
4,049,280	-		PP_3569	0.76	-0.2
4,049,291	-		PP_3569	0.76	+0.5
4,049,790	+				-0.3
4,049,790	+				-0.0
4,049,790	+				+1.8
4,049,842	-				-0.4
4,049,842	-				-0.6
4,049,842	-				-0.0
4,049,903	+				-0.6
4,049,903	+				+0.1
4,049,966	+				+0.2
4,050,128	-		PP_3570	0.13	-0.2
4,050,145	+		PP_3570	0.14	-0.6
4,050,347	-		PP_3570	0.30	+0.2
4,050,370	+		PP_3570	0.32	-0.1
4,050,371	-		PP_3570	0.32	+0.7
4,050,532	+		PP_3570	0.44	+0.4
4,050,565	+		PP_3570	0.47	+0.3
4,050,565	+		PP_3570	0.47	+0.4
4,050,689	+		PP_3570	0.57	+0.0
4,050,698	+		PP_3570	0.58	+0.3
4,050,699	-		PP_3570	0.58	-0.7
4,050,701	-		PP_3570	0.58	+0.3
4,050,701	-		PP_3570	0.58	-0.2
4,050,701	-		PP_3570	0.58	-0.0
4,050,701	-		PP_3570	0.58	-1.2
4,050,701	-		PP_3570	0.58	+0.1
4,050,701	-		PP_3570	0.58	-0.1
4,050,731	-		PP_3570	0.60	+0.4
4,050,731	-		PP_3570	0.60	-1.3
4,050,742	+		PP_3570	0.61	-0.4
4,050,742	+		PP_3570	0.61	-0.3
4,050,743	-		PP_3570	0.61	-0.1
4,050,743	-		PP_3570	0.61	+0.1
4,050,745	+		PP_3570	0.61	-0.5
4,050,746	-		PP_3570	0.61	-0.3
4,050,746	-		PP_3570	0.61	-0.5
4,050,746	-		PP_3570	0.61	-0.2
4,050,746	-		PP_3570	0.61	-0.1
4,050,748	+		PP_3570	0.61	+1.0
4,050,748	+		PP_3570	0.61	-0.3
4,050,749	-		PP_3570	0.62	-0.2
4,050,749	-		PP_3570	0.62	+0.2
4,050,811	+		PP_3570	0.66	-0.6
4,050,811	+		PP_3570	0.66	+0.4
4,050,812	-		PP_3570	0.67	-0.2
4,050,812	-		PP_3570	0.67	-0.3
4,050,812	-		PP_3570	0.67	-0.9
4,050,925	+		PP_3570	0.75	-0.3
4,050,946	+		PP_3570	0.77	-0.1
4,050,946	+		PP_3570	0.77	+0.0
4,050,946	+		PP_3570	0.77	-0.6
4,050,947	-		PP_3570	0.77	+0.0
4,050,947	-		PP_3570	0.77	+0.3
4,050,947	-		PP_3570	0.77	+0.3
4,050,947	-		PP_3570	0.77	-0.6
4,050,976	-		PP_3570	0.79	-0.1
4,050,992	-				+1.3
4,051,105	+		PP_3570	0.90	+0.7
4,051,105	+		PP_3570	0.90	-0.1
4,051,153	+				-0.6
4,051,153	+				+1.9
4,051,153	+				-0.1
4,051,154	-				-0.2
4,051,154	-				-0.5
4,051,154	-				-0.4
4,051,154	-				+0.7
4,051,154	-				+0.1
4,051,154	-				-0.1
4,051,154	-				-0.4
4,051,451	-		PP_3571	0.15	-0.6
4,051,465	-		PP_3571	0.16	-1.8
4,051,570	-				+0.7
4,051,610	+		PP_3571	0.28	+0.9
4,051,610	+		PP_3571	0.28	-0.4
4,051,610	+		PP_3571	0.28	-0.1
4,051,610	+		PP_3571	0.28	-0.3
4,051,975	-		PP_3571	0.59	+0.3
4,052,147	+		PP_3571	0.74	+0.4
4,052,223	+		PP_3571	0.80	-0.2
4,052,224	-		PP_3571	0.80	+0.3