Strain Fitness in Pseudomonas putida KT2440 around PP_1885

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
2,118,003	+		PP_1884	0.68	-0.3
2,118,003	+		PP_1884	0.68	-0.1
2,118,004	-		PP_1884	0.68	+0.1
2,118,347	+		PP_1884	0.82	-0.1
2,118,347	+		PP_1884	0.82	-0.5
2,118,347	+		PP_1884	0.82	-0.4
2,118,347	+		PP_1884	0.82	-0.2
2,118,347	+		PP_1884	0.82	-0.1
2,118,347	+		PP_1884	0.82	-0.8
2,118,348	-		PP_1884	0.82	-0.0
2,118,348	-		PP_1884	0.82	-0.1
2,118,349	+		PP_1884	0.82	+0.6
2,118,349	+		PP_1884	0.82	+0.3
2,118,611	+				+0.2
2,118,612	-				-0.1
2,118,612	-				-0.0
2,118,614	+				+0.2
2,118,614	+				-0.5
2,118,615	-				+0.1
2,118,615	-				+0.3
2,118,615	-				-0.5
2,118,684	+				-0.0
2,118,685	-				-0.8
2,118,685	-				+1.7
2,118,685	-				-1.0
2,118,746	+				+0.0
2,118,747	-				-0.9
2,118,788	+				+0.1
2,118,807	+				-0.4
2,118,855	+				-0.5
2,118,856	-				+0.2
2,118,862	+				+0.0
2,118,862	+				+0.1
2,118,862	+				-0.8
2,118,863	-				+0.4
2,118,894	+				-0.2
2,118,894	+				-0.1
2,119,086	+		PP_1885	0.10	-0.2
2,119,100	-		PP_1885	0.11	-0.1
2,119,381	+		PP_1885	0.23	+0.1
2,119,382	-		PP_1885	0.23	-0.2
2,119,382	-		PP_1885	0.23	-0.3
2,119,382	-		PP_1885	0.23	+0.3
2,119,420	+		PP_1885	0.24	+0.0
2,119,421	-		PP_1885	0.24	+0.5
2,119,445	+		PP_1885	0.25	-1.3
2,119,445	+		PP_1885	0.25	-0.3
2,119,445	+		PP_1885	0.25	-0.0
2,119,446	-		PP_1885	0.25	+0.2
2,119,446	-		PP_1885	0.25	+0.4
2,119,630	+		PP_1885	0.33	-0.3
2,119,631	-		PP_1885	0.33	-0.8
2,119,695	+		PP_1885	0.36	+0.4
2,119,738	+		PP_1885	0.38	+0.4
2,119,750	+		PP_1885	0.38	-0.5
2,119,750	+		PP_1885	0.38	-0.4
2,119,750	+		PP_1885	0.38	-0.0
2,119,750	+		PP_1885	0.38	-0.4
2,119,750	+		PP_1885	0.38	-0.4
2,119,751	-		PP_1885	0.38	+0.1
2,119,765	+		PP_1885	0.39	+0.3
2,119,765	+		PP_1885	0.39	+0.2
2,119,766	-		PP_1885	0.39	-0.2
2,119,766	-		PP_1885	0.39	+0.4
2,119,766	-		PP_1885	0.39	+0.3
2,119,930	+		PP_1885	0.46	+1.0
2,119,931	-		PP_1885	0.46	-0.8
2,119,957	+		PP_1885	0.47	+0.8
2,119,957	+		PP_1885	0.47	-0.3
2,119,958	-		PP_1885	0.47	-0.2
2,120,043	+		PP_1885	0.51	-0.5
2,120,043	+		PP_1885	0.51	-0.8
2,120,043	+		PP_1885	0.51	-0.2
2,120,043	+		PP_1885	0.51	-0.4
2,120,043	+		PP_1885	0.51	-0.0
2,120,043	+		PP_1885	0.51	+0.0
2,120,043	+		PP_1885	0.51	-0.7
2,120,044	-		PP_1885	0.51	-0.4
2,120,044	-		PP_1885	0.51	+0.0
2,120,044	-		PP_1885	0.51	+0.3
2,120,044	-		PP_1885	0.51	+0.1
2,120,044	-		PP_1885	0.51	-0.1
2,120,051	+		PP_1885	0.51	+0.7
2,120,052	-		PP_1885	0.51	+0.3
2,120,052	-		PP_1885	0.51	+0.1
2,120,052	-		PP_1885	0.51	+0.7
2,120,143	+		PP_1885	0.55	+0.8
2,120,143	+		PP_1885	0.55	+0.3
2,120,143	+		PP_1885	0.55	-0.5
2,120,144	-		PP_1885	0.55	-0.0
2,120,264	+		PP_1885	0.60	+0.2
2,120,283	-		PP_1885	0.61	-0.2
2,120,376	+		PP_1885	0.65	-0.1
2,120,376	+		PP_1885	0.65	-0.6
2,120,376	+		PP_1885	0.65	+0.6
2,120,376	+		PP_1885	0.65	+0.1
2,120,627	-				-0.2
2,120,752	+		PP_1885	0.81	-0.2
2,120,753	-		PP_1885	0.81	+0.0
2,120,753	-		PP_1885	0.81	-0.3
2,120,753	-		PP_1885	0.81	+0.3
2,120,766	+		PP_1885	0.81	+0.1
2,120,766	+		PP_1885	0.81	-0.1
2,120,766	+		PP_1885	0.81	+0.0
2,120,767	-		PP_1885	0.81	-0.4
2,120,788	+		PP_1885	0.82	-0.6
2,120,788	+		PP_1885	0.82	+0.0
2,120,788	+		PP_1885	0.82	-0.9
2,120,788	+		PP_1885	0.82	-0.0
2,120,845	+		PP_1885	0.85	+0.0
2,120,845	+		PP_1885	0.85	+0.3
2,120,845	+		PP_1885	0.85	-1.0
2,120,845	+		PP_1885	0.85	+0.2
2,120,845	+		PP_1885	0.85	-0.2
2,120,845	+		PP_1885	0.85	+0.0
2,120,845	+		PP_1885	0.85	-0.5
2,120,845	+		PP_1885	0.85	+0.3
2,120,845	+		PP_1885	0.85	-0.0
2,120,846	-		PP_1885	0.85	+0.1
2,120,846	-		PP_1885	0.85	+0.6
2,120,846	-		PP_1885	0.85	-0.8
2,120,846	-		PP_1885	0.85	-0.5
2,120,846	-		PP_1885	0.85	-0.5
2,120,855	+		PP_1885	0.85	-1.7
2,120,925	+		PP_1885	0.88	-0.4
2,120,925	+		PP_1885	0.88	-0.2
2,120,926	-		PP_1885	0.88	+0.1
2,120,926	-		PP_1885	0.88	-0.1
2,120,926	-		PP_1885	0.88	+0.8
2,120,926	-		PP_1885	0.88	+0.3
2,121,258	+				-0.2
2,121,259	-				+0.3
2,121,287	+				+0.2
2,121,288	-				+0.2
2,121,290	-				+0.5
2,121,326	+				-0.2
2,121,326	+				+0.5
2,121,327	-				-0.3
2,121,327	-				+0.1
2,121,617	+		PP_1886	0.15	-0.5
2,121,803	-		PP_1886	0.22	-0.5
2,121,803	-		PP_1886	0.22	+0.2
2,121,803	-		PP_1886	0.22	-0.0
2,121,863	+		PP_1886	0.24	+0.0
2,121,863	+		PP_1886	0.24	+0.4
2,121,863	+		PP_1886	0.24	+0.6
2,121,944	+		PP_1886	0.26	-0.1
2,121,944	+		PP_1886	0.26	-0.4
2,121,944	+		PP_1886	0.26	-0.1
2,121,945	-		PP_1886	0.26	-0.6
2,121,966	-		PP_1886	0.27	-0.2
2,122,084	+		PP_1886	0.31	+0.1
2,122,200	-		PP_1886	0.35	-0.5