Strain Fitness in Pseudomonas putida KT2440 around PP_1792

Experiment: LB_control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_control
2,008,091	+		PP_1791	0.46	+0.4
2,008,091	+		PP_1791	0.46	-0.3
2,008,124	+		PP_1791	0.48	-0.2
2,008,125	-		PP_1791	0.48	-1.0
2,008,127	+		PP_1791	0.48	-0.6
2,008,127	+				-0.4
2,008,127	+		PP_1791	0.48	+0.3
2,008,131	-		PP_1791	0.48	-0.2
2,008,156	-		PP_1791	0.50	+0.2
2,008,296	+		PP_1791	0.58	-0.2
2,008,296	+		PP_1791	0.58	-0.3
2,008,338	+		PP_1791	0.61	-0.4
2,008,338	+		PP_1791	0.61	-0.3
2,008,566	-		PP_1791	0.75	-0.4
2,008,632	+		PP_1791	0.79	-0.6
2,008,632	+		PP_1791	0.79	-0.1
2,008,633	-		PP_1791	0.79	+0.2
2,008,678	+		PP_1791	0.82	-0.3
2,008,678	+		PP_1791	0.82	-0.3
2,008,679	-		PP_1791	0.82	+0.1
2,008,679	-		PP_1791	0.82	+0.3
2,008,791	+		PP_1791	0.89	+0.5
2,008,791	+		PP_1791	0.89	-0.2
2,008,792	-		PP_1791	0.89	+0.1
2,008,793	+		PP_1791	0.89	-0.2
2,008,793	+		PP_1791	0.89	-0.0
2,008,879	+				+0.1
2,008,882	-				-0.5
2,008,884	-				-0.2
2,008,884	-				+0.8
2,008,884	-				-0.9
2,008,922	+				-0.4
2,008,978	+				-0.1
2,008,979	-				-0.3
2,008,994	+				-0.4
2,009,024	-				+0.5
2,009,028	-				+0.2
2,009,119	+				-0.7
2,009,119	+				+0.1
2,009,130	+				-0.2
2,009,144	-				-0.1
2,009,146	+				-0.1
2,009,146	+				+0.4
2,009,147	-				-0.4
2,009,228	+				-0.4
2,009,229	-				-0.1
2,009,288	+		PP_1792	0.12	-0.4
2,009,288	+		PP_1792	0.12	-0.5
2,009,288	+		PP_1792	0.12	-0.1
2,009,288	+		PP_1792	0.12	-0.2
2,009,289	-		PP_1792	0.12	-0.4
2,009,292	+		PP_1792	0.12	-0.6
2,009,292	+		PP_1792	0.12	-0.2
2,009,293	-		PP_1792	0.12	-0.2
2,009,394	+		PP_1792	0.16	-0.0
2,009,395	-		PP_1792	0.16	-0.2
2,009,455	+		PP_1792	0.19	-0.4
2,009,521	-		PP_1792	0.21	-0.4
2,009,521	-		PP_1792	0.21	-0.6
2,009,521	-		PP_1792	0.21	+0.1
2,009,652	+		PP_1792	0.27	-0.3
2,009,707	+		PP_1792	0.29	+0.1
2,009,707	+		PP_1792	0.29	-0.2
2,009,707	+		PP_1792	0.29	-0.3
2,009,708	-		PP_1792	0.29	-0.9
2,009,763	+		PP_1792	0.31	-0.0
2,009,763	+		PP_1792	0.31	-0.2
2,009,764	-		PP_1792	0.31	-0.2
2,009,767	+		PP_1792	0.31	-0.0
2,009,875	+		PP_1792	0.36	-0.3
2,009,876	-		PP_1792	0.36	-0.5
2,009,956	+		PP_1792	0.39	-0.3
2,010,003	+		PP_1792	0.41	-0.4
2,010,059	+		PP_1792	0.43	-0.1
2,010,059	+		PP_1792	0.43	+0.2
2,010,059	+		PP_1792	0.43	-0.4
2,010,059	+		PP_1792	0.43	-0.7
2,010,059	+		PP_1792	0.43	-0.4
2,010,059	+		PP_1792	0.43	-0.9
2,010,059	+		PP_1792	0.43	-0.6
2,010,060	-		PP_1792	0.43	-0.2
2,010,060	-		PP_1792	0.43	-0.7
2,010,060	-		PP_1792	0.43	+0.2
2,010,060	-		PP_1792	0.43	-0.3
2,010,065	+		PP_1792	0.44	-0.6
2,010,066	-		PP_1792	0.44	+0.0
2,010,066	-		PP_1792	0.44	+0.1
2,010,066	-		PP_1792	0.44	-0.3
2,010,071	+		PP_1792	0.44	+0.1
2,010,072	-		PP_1792	0.44	+0.0
2,010,105	+		PP_1792	0.45	+0.2
2,010,120	+		PP_1792	0.46	-0.3
2,010,132	+		PP_1792	0.46	-0.1
2,010,132	+		PP_1792	0.46	+0.2
2,010,133	-		PP_1792	0.46	+0.2
2,010,133	-		PP_1792	0.46	-0.2
2,010,138	+		PP_1792	0.47	-0.5
2,010,139	-		PP_1792	0.47	+0.1
2,010,139	-		PP_1792	0.47	-0.2
2,010,139	-		PP_1792	0.47	-0.1
2,010,150	+		PP_1792	0.47	+0.3
2,010,150	+		PP_1792	0.47	+0.1
2,010,151	-		PP_1792	0.47	-0.5
2,010,243	-		PP_1792	0.51	-0.3
2,010,305	+		PP_1792	0.54	-0.3
2,010,306	-		PP_1792	0.54	-0.0
2,010,306	-		PP_1792	0.54	-0.9
2,010,306	-		PP_1792	0.54	+0.3
2,010,343	+		PP_1792	0.55	+0.9
2,010,428	+		PP_1792	0.59	+0.1
2,010,534	-		PP_1792	0.63	-0.4
2,010,573	+		PP_1792	0.65	-0.4
2,010,573	+				+0.6
2,010,573	+		PP_1792	0.65	-0.1
2,010,574	-		PP_1792	0.65	+0.1
2,010,574	-		PP_1792	0.65	-0.3
2,010,574	-		PP_1792	0.65	-0.4
2,010,574	-		PP_1792	0.65	-0.4
2,010,574	-		PP_1792	0.65	-0.4
2,010,579	+		PP_1792	0.65	-0.1
2,010,579	+		PP_1792	0.65	+0.2
2,010,579	+		PP_1792	0.65	-0.8
2,010,579	+		PP_1792	0.65	+0.4
2,010,617	+		PP_1792	0.66	-0.5
2,010,643	+		PP_1792	0.67	+0.2
2,010,643	+		PP_1792	0.67	-0.7
2,010,643	+		PP_1792	0.67	-0.3
2,010,643	+		PP_1792	0.67	+0.8
2,010,643	+		PP_1792	0.67	-0.7
2,010,643	+		PP_1792	0.67	-0.1
2,010,643	+		PP_1792	0.67	+0.1
2,010,644	-		PP_1792	0.67	-0.0
2,010,644	-		PP_1792	0.67	+0.1
2,010,644	-		PP_1792	0.67	-0.1
2,010,644	-		PP_1792	0.67	-0.2
2,010,644	-		PP_1792	0.67	-0.2
2,010,681	+		PP_1792	0.69	+0.3
2,010,800	+		PP_1792	0.74	-0.3
2,010,800	+		PP_1792	0.74	+0.1
2,010,801	-		PP_1792	0.74	-0.8
2,010,837	+		PP_1792	0.75	-0.5
2,010,885	+		PP_1792	0.77	+0.1
2,010,916	+		PP_1792	0.79	-0.3
2,010,938	+		PP_1792	0.80	-0.4
2,010,939	-		PP_1792	0.80	+0.1
2,010,969	-		PP_1792	0.81	+0.7
2,010,983	+		PP_1792	0.81	-0.1
2,010,983	+		PP_1792	0.81	-0.7
2,010,984	-		PP_1792	0.81	+0.2
2,010,984	-		PP_1792	0.81	-0.5
2,010,987	+		PP_1792	0.82	+0.1
2,010,987	+		PP_1792	0.82	+0.4
2,010,987	+		PP_1792	0.82	-0.3
2,010,988	-		PP_1792	0.82	+0.5
2,010,988	-		PP_1792	0.82	+0.1
2,011,049	+		PP_1792	0.84	+1.0
2,011,050	-		PP_1792	0.84	-0.1
2,011,056	+		PP_1792	0.84	-0.3
2,011,057	-		PP_1792	0.84	-0.2
2,011,068	+		PP_1792	0.85	-0.0
2,011,133	+		PP_1792	0.88	+0.8
2,011,134	-		PP_1792	0.88	-0.1
2,011,134	-		PP_1792	0.88	+0.3
2,011,136	+		PP_1792	0.88	-0.8
2,011,137	-		PP_1792	0.88	+0.4
2,011,137	-		PP_1792	0.88	-0.8
2,011,197	-				-0.3
2,011,316	+				+0.1
2,011,457	+				+0.4
2,011,466	+				-0.2
2,011,467	-				+0.8
2,011,467	-				-0.9
2,011,510	+				-0.0
2,011,511	-				+0.0
2,011,512	+				+0.2
2,011,512	+				-0.4
2,011,513	-				-0.2
2,011,513	-				+0.0
2,011,637	+				-0.2
2,011,647	-				+0.6
2,011,673	+				-0.1
2,011,714	+		PP_1793	0.11	-0.3
2,011,714	+		PP_1793	0.11	-0.4
2,011,777	+		PP_1793	0.13	-0.1
2,011,777	+		PP_1793	0.13	+0.1
2,011,777	+		PP_1793	0.13	-0.2
2,011,777	+		PP_1793	0.13	-0.1
2,011,777	+		PP_1793	0.13	-0.9
2,011,777	+		PP_1793	0.13	+0.0
2,011,778	-				+0.3
2,011,778	-		PP_1793	0.13	-0.0
2,011,778	-		PP_1793	0.13	-0.7
2,011,805	+		PP_1793	0.14	-0.4
2,011,805	+		PP_1793	0.14	-0.4
2,011,805	+		PP_1793	0.14	-0.4
2,011,806	-		PP_1793	0.14	+0.0
2,011,806	-		PP_1793	0.14	+0.1
2,011,806	-		PP_1793	0.14	-0.7
2,011,855	+				+0.6
2,011,894	+		PP_1793	0.18	-1.0
2,011,895	-		PP_1793	0.18	+0.7
2,011,895	-		PP_1793	0.18	-0.1
2,011,895	-		PP_1793	0.18	-0.4
2,011,914	-		PP_1793	0.19	-0.0
2,011,956	+		PP_1793	0.20	-0.4
2,011,956	+		PP_1793	0.20	-0.1
2,011,956	+		PP_1793	0.20	+0.2
2,011,956	+		PP_1793	0.20	-0.3
2,011,957	-		PP_1793	0.20	-0.8
2,011,957	-		PP_1793	0.20	-1.3
2,011,957	-		PP_1793	0.20	-0.0
2,011,960	+		PP_1793	0.20	-0.3
2,011,961	-		PP_1793	0.20	-0.1
2,011,961	-		PP_1793	0.20	+0.3
2,011,994	+		PP_1793	0.22	-0.1
2,011,994	+		PP_1793	0.22	+0.5
2,012,005	-		PP_1793	0.22	+0.1
2,012,096	+		PP_1793	0.26	-0.2
2,012,096	+		PP_1793	0.26	+0.1
2,012,097	-		PP_1793	0.26	+0.0
2,012,097	-		PP_1793	0.26	-0.2
2,012,097	-		PP_1793	0.26	-0.7
2,012,097	-		PP_1793	0.26	-0.0
2,012,097	-		PP_1793	0.26	+0.4
2,012,224	+		PP_1793	0.31	-0.2
2,012,225	-		PP_1793	0.31	+0.5
2,012,225	-		PP_1793	0.31	-0.2
2,012,255	+		PP_1793	0.32	-0.3
2,012,260	+		PP_1793	0.32	-0.2
2,012,260	+		PP_1793	0.32	-1.5
2,012,260	+		PP_1793	0.32	-0.6
2,012,260	+		PP_1793	0.32	+0.8
2,012,260	+		PP_1793	0.32	+0.2
2,012,261	-		PP_1793	0.32	-1.0
2,012,261	-		PP_1793	0.32	-0.0
2,012,261	-		PP_1793	0.32	+0.2
2,012,261	-		PP_1793	0.32	-0.0
2,012,261	-		PP_1793	0.32	-0.0
2,012,339	+		PP_1793	0.35	-0.6
2,012,339	+		PP_1793	0.35	+0.3
2,012,387	-		PP_1793	0.37	+0.3
2,012,388	+		PP_1793	0.37	-0.5
2,012,388	+		PP_1793	0.37	-0.2
2,012,388	+		PP_1793	0.37	+0.0
2,012,388	+		PP_1793	0.37	-0.4
2,012,388	+		PP_1793	0.37	+1.3
2,012,388	+		PP_1793	0.37	-0.6
2,012,389	-		PP_1793	0.37	-0.7
2,012,389	-		PP_1793	0.37	+0.4
2,012,389	-		PP_1793	0.37	-0.2
2,012,389	-		PP_1793	0.37	-0.5
2,012,426	-		PP_1793	0.38	+0.5
2,012,426	-		PP_1793	0.38	-0.0
2,012,426	-		PP_1793	0.38	+0.1