Strain Fitness in Pseudomonas putida KT2440 around PP_2680

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2
3,068,024	+		PP_2679	0.59	-0.4
3,068,228	+		PP_2679	0.71	-0.9
3,068,229	-		PP_2679	0.71	+0.5
3,068,229	-		PP_2679	0.71	+0.2
3,068,229	-		PP_2679	0.71	+0.2
3,068,229	-		PP_2679	0.71	-0.1
3,068,252	+		PP_2679	0.72	-0.3
3,068,252	+		PP_2679	0.72	-0.1
3,068,252	+		PP_2679	0.72	+0.4
3,068,303	+		PP_2679	0.75	+0.2
3,068,304	-		PP_2679	0.75	-0.5
3,068,304	-		PP_2679	0.75	-0.1
3,068,304	-		PP_2679	0.75	+0.4
3,068,305	+		PP_2679	0.75	-0.1
3,068,306	-		PP_2679	0.75	+0.1
3,068,363	+		PP_2679	0.78	-1.0
3,068,426	+		PP_2679	0.82	+0.3
3,068,427	-		PP_2679	0.82	-0.6
3,068,427	-		PP_2679	0.82	+0.1
3,068,600	+				-0.1
3,068,601	-				+0.7
3,068,601	-				-0.2
3,068,601	-				-0.5
3,068,610	+				+0.3
3,068,748	-				-0.1
3,068,759	-				+0.5
3,068,759	-				-0.1
3,068,797	+				-0.9
3,068,797	+				+0.0
3,068,801	-				+1.4
3,068,801	-				+1.0
3,068,858	+				-0.6
3,068,858	+				+0.3
3,068,918	+				+1.1
3,068,919	-				-1.2
3,068,919	-				-0.1
3,069,014	+				-0.2
3,069,328	-		PP_2680	0.27	+0.0
3,069,851	+		PP_2680	0.62	+0.2
3,069,852	-		PP_2680	0.62	+0.2
3,069,956	+		PP_2680	0.69	+0.9
3,070,062	-		PP_2680	0.76	-0.5
3,070,062	-		PP_2680	0.76	-0.7
3,070,062	-		PP_2680	0.76	+0.0
3,070,062	-		PP_2680	0.76	-0.2
3,070,286	+				+0.0
3,070,287	-				-0.2
3,070,287	-				-0.9
3,070,322	+				-0.5
3,070,374	-				-0.5
3,070,403	+				-0.2
3,070,404	-				+0.3
3,070,557	-				-0.5
3,070,588	-				-0.1
3,070,671	+				-0.1
3,070,681	+				+0.3
3,070,681	+				+0.2
3,070,683	+				-0.0
3,070,717	+				+0.7
3,070,718	-				-0.1
3,070,777	+				+0.4
3,070,778	-				+0.1
3,070,876	+		PP_2681	0.33	-0.1
3,070,877	-		PP_2681	0.33	+0.8
3,071,051	+				+0.2
3,071,052	-				+0.6
3,071,104	+				+0.2
3,071,104	+				-0.1
3,071,105	-				-0.1
3,071,105	-				-0.1
3,071,131	+				+0.2
3,071,131	+				-0.3
3,071,132	-				+0.2
3,071,143	+				-0.4
3,071,261	-				-0.3
3,071,343	+		PP_2682	0.17	+0.3
3,071,344	-		PP_2682	0.17	+0.8
3,071,353	-		PP_2682	0.18	-0.5
3,071,409	+		PP_2682	0.22	+0.2
3,071,410	-		PP_2682	0.23	-0.5