Strain Fitness in Pseudomonas putida KT2440 around PP_1752

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2
1,952,943	+		PP_1751	0.70	-0.4
1,953,094	+		PP_1751	0.77	-0.8
1,953,094	+		PP_1751	0.77	+0.1
1,953,095	-		PP_1751	0.77	-0.1
1,953,164	+		PP_1751	0.81	-0.7
1,953,164	+		PP_1751	0.81	+0.1
1,953,165	-		PP_1751	0.81	+0.4
1,953,165	-		PP_1751	0.81	-0.5
1,953,165	-		PP_1751	0.81	-0.4
1,953,188	+		PP_1751	0.82	-0.2
1,953,189	-		PP_1751	0.82	-0.6
1,953,248	+		PP_1751	0.85	-0.6
1,953,462	-				-0.2
1,953,474	-				+0.5
1,953,474	-				+0.4
1,953,574	-				-0.1
1,953,623	+				-0.1
1,953,624	-				-0.2
1,953,624	-				+0.0
1,953,624	-				+0.1
1,953,655	+				+0.9
1,953,722	+				+0.3
1,953,722	+				-0.3
1,953,722	+				-0.8
1,953,723	-				+0.4
1,953,770	+				-0.4
1,953,770	+				-0.4
1,953,849	+		PP_1752	0.12	+0.2
1,953,850	-		PP_1752	0.12	+1.0
1,954,001	+		PP_1752	0.22	-0.2
1,954,002	-		PP_1752	0.22	-0.9
1,954,067	-		PP_1752	0.26	+0.0
1,954,235	+		PP_1752	0.37	+0.1
1,954,235	+		PP_1752	0.37	-0.0
1,954,235	+		PP_1752	0.37	+0.0
1,954,235	+		PP_1752	0.37	+0.2
1,954,236	-		PP_1752	0.37	+0.2
1,954,289	+		PP_1752	0.41	+0.1
1,954,289	+		PP_1752	0.41	-0.7
1,954,289	+		PP_1752	0.41	-0.1
1,954,318	-		PP_1752	0.43	+0.2
1,954,496	+		PP_1752	0.55	-0.4
1,954,666	-		PP_1752	0.66	-0.4
1,954,706	+		PP_1752	0.69	+0.7
1,954,773	-		PP_1752	0.73	-0.3
1,954,773	-				+0.2
1,954,836	-		PP_1752	0.78	+0.5
1,954,837	+		PP_1752	0.78	-1.6
1,954,838	-		PP_1752	0.78	-0.3
1,954,838	-		PP_1752	0.78	-0.3
1,954,968	-		PP_1752	0.86	+0.2
1,955,016	-		PP_1752	0.90	+1.4
1,955,016	-		PP_1752	0.90	-0.8
1,955,016	-		PP_1752	0.90	-0.3
1,955,321	+				+0.2
1,955,321	+				-0.4
1,955,363	-				-0.1
1,955,624	+		PP_1753	0.27	-0.1
1,955,624	+		PP_1753	0.27	-0.1
1,955,624	+		PP_1753	0.27	+0.3
1,955,625	-		PP_1753	0.27	-0.4
1,955,625	-		PP_1753	0.27	-0.3
1,955,625	-		PP_1753	0.27	-0.3
1,955,633	+		PP_1753	0.28	-0.0
1,955,682	+		PP_1753	0.33	-0.3
1,955,682	+		PP_1753	0.33	+0.0
1,955,837	+		PP_1753	0.49	-0.1
1,955,837	+		PP_1753	0.49	-0.8
1,955,837	+		PP_1753	0.49	+0.3
1,955,837	+		PP_1753	0.49	-0.5
1,955,837	+				-0.6
1,955,838	-		PP_1753	0.49	-0.6
1,955,838	-		PP_1753	0.49	-0.2
1,955,889	-		PP_1753	0.54	+0.1
1,955,938	-		PP_1753	0.59	-0.1
1,955,938	-		PP_1753	0.59	+0.1
1,955,952	-		PP_1753	0.60	-0.4
1,955,952	-		PP_1753	0.60	+0.2
1,956,065	+		PP_1753	0.72	+0.2
1,956,066	-		PP_1753	0.72	-0.0