Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4180 and PP_4181 overlap by 4 nucleotides PP_4181 and PP_5661 are separated by 154 nucleotides PP_5661 and PP_4183 are separated by 67 nucleotides PP_4183 and PP_4184 are separated by 235 nucleotides
PP_4180: PP_4180 - conserved protein of unknown function, at 4,723,633 to 4,724,115
_4180
PP_4181: PP_4181 - conserved protein of unknown function, at 4,724,112 to 4,724,588
_4181
PP_5661: PP_5661 - putative lipoprotein, at 4,724,743 to 4,725,015
_5661
PP_4183: PP_4183 - conserved membrane protein of unknown function, at 4,725,083 to 4,725,832
_4183
PP_4184: PP_4184 - branched chain amino acid transporter, at 4,726,068 to 4,727,381
_4184
Position (kb)
4725
4726 Strain fitness (log2 ratio)
-2
-1
0
1 at 4724.269 kb on + strand, within PP_4181 at 4724.269 kb on + strand, within PP_4181 at 4724.269 kb on + strand, within PP_4181 at 4724.270 kb on - strand, within PP_4181 at 4724.287 kb on + strand, within PP_4181 at 4724.287 kb on + strand, within PP_4181 at 4724.287 kb on + strand, within PP_4181 at 4724.287 kb on + strand, within PP_4181 at 4724.288 kb on - strand, within PP_4181 at 4724.288 kb on - strand, within PP_4181 at 4724.288 kb on - strand at 4724.288 kb on - strand, within PP_4181 at 4724.288 kb on - strand, within PP_4181 at 4724.288 kb on - strand, within PP_4181 at 4724.320 kb on + strand, within PP_4181 at 4724.320 kb on + strand, within PP_4181 at 4724.321 kb on - strand, within PP_4181 at 4724.321 kb on - strand, within PP_4181 at 4724.622 kb on - strand at 4724.644 kb on - strand at 4724.656 kb on + strand at 4724.656 kb on + strand at 4724.657 kb on - strand at 4724.657 kb on - strand at 4724.658 kb on + strand at 4724.658 kb on + strand at 4724.659 kb on - strand at 4724.659 kb on - strand at 4724.659 kb on - strand at 4724.660 kb on + strand at 4724.660 kb on + strand at 4724.661 kb on - strand at 4724.661 kb on - strand at 4724.691 kb on + strand at 4724.749 kb on - strand at 4724.749 kb on - strand at 4724.749 kb on - strand at 4724.749 kb on - strand at 4724.805 kb on + strand, within PP_5661 at 4724.806 kb on - strand, within PP_5661 at 4724.883 kb on + strand, within PP_5661 at 4724.985 kb on + strand, within PP_5661 at 4724.985 kb on + strand, within PP_5661 at 4724.986 kb on - strand, within PP_5661 at 4724.988 kb on + strand at 4724.988 kb on + strand at 4724.988 kb on + strand at 4724.988 kb on + strand at 4724.989 kb on - strand at 4725.013 kb on + strand at 4725.014 kb on - strand at 4725.014 kb on - strand at 4725.014 kb on - strand at 4725.021 kb on + strand at 4725.126 kb on - strand at 4725.162 kb on - strand, within PP_4183 at 4725.162 kb on - strand, within PP_4183 at 4725.162 kb on - strand, within PP_4183 at 4725.201 kb on - strand, within PP_4183 at 4725.201 kb on - strand, within PP_4183 at 4725.201 kb on - strand, within PP_4183 at 4725.201 kb on - strand, within PP_4183 at 4725.238 kb on + strand, within PP_4183 at 4725.267 kb on + strand, within PP_4183 at 4725.270 kb on + strand, within PP_4183 at 4725.415 kb on - strand, within PP_4183 at 4725.450 kb on + strand, within PP_4183 at 4725.451 kb on - strand, within PP_4183 at 4725.458 kb on + strand, within PP_4183 at 4725.458 kb on + strand, within PP_4183 at 4725.459 kb on - strand, within PP_4183 at 4725.754 kb on - strand, within PP_4183 at 4725.760 kb on + strand at 4725.762 kb on + strand at 4725.762 kb on + strand at 4725.762 kb on + strand at 4725.762 kb on + strand at 4725.762 kb on + strand at 4725.763 kb on - strand at 4725.860 kb on + strand at 4725.930 kb on - strand at 4725.930 kb on - strand at 4725.930 kb on - strand at 4726.144 kb on - strand at 4726.144 kb on - strand at 4726.255 kb on - strand, within PP_4184 at 4726.342 kb on + strand, within PP_4184 at 4726.342 kb on + strand, within PP_4184 at 4726.472 kb on - strand, within PP_4184 at 4726.565 kb on + strand, within PP_4184 at 4726.565 kb on + strand, within PP_4184 at 4726.566 kb on - strand, within PP_4184 at 4726.566 kb on - strand, within PP_4184 at 4726.566 kb on - strand, within PP_4184 at 4726.572 kb on + strand, within PP_4184 at 4726.572 kb on + strand, within PP_4184 at 4726.572 kb on + strand, within PP_4184 at 4726.572 kb on + strand, within PP_4184 at 4726.572 kb on + strand, within PP_4184 at 4726.573 kb on - strand, within PP_4184 at 4726.573 kb on - strand, within PP_4184 at 4726.576 kb on + strand, within PP_4184 at 4726.577 kb on - strand, within PP_4184 at 4726.657 kb on + strand, within PP_4184 at 4726.657 kb on + strand, within PP_4184 at 4726.657 kb on + strand, within PP_4184 at 4726.658 kb on - strand, within PP_4184 at 4726.805 kb on - strand, within PP_4184
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2 remove 4,724,269 + PP_4181 0.33 -0.4 4,724,269 + PP_4181 0.33 +0.1 4,724,269 + PP_4181 0.33 -0.2 4,724,270 - PP_4181 0.33 -0.9 4,724,287 + PP_4181 0.37 +0.0 4,724,287 + PP_4181 0.37 +0.1 4,724,287 + PP_4181 0.37 +0.9 4,724,287 + PP_4181 0.37 -0.5 4,724,288 - PP_4181 0.37 -0.4 4,724,288 - PP_4181 0.37 +1.4 4,724,288 - -0.9 4,724,288 - PP_4181 0.37 -0.8 4,724,288 - PP_4181 0.37 +0.1 4,724,288 - PP_4181 0.37 +0.5 4,724,320 + PP_4181 0.44 -0.0 4,724,320 + PP_4181 0.44 +0.3 4,724,321 - PP_4181 0.44 +0.2 4,724,321 - PP_4181 0.44 -0.5 4,724,622 - +0.5 4,724,644 - -0.7 4,724,656 + -0.1 4,724,656 + -0.6 4,724,657 - +0.3 4,724,657 - -0.3 4,724,658 + +0.5 4,724,658 + +0.0 4,724,659 - +0.3 4,724,659 - +0.2 4,724,659 - -0.8 4,724,660 + +0.8 4,724,660 + -1.1 4,724,661 - -0.2 4,724,661 - +0.7 4,724,691 + -1.3 4,724,749 - +0.1 4,724,749 - +0.0 4,724,749 - +0.2 4,724,749 - +0.7 4,724,805 + PP_5661 0.23 +0.2 4,724,806 - PP_5661 0.23 -0.7 4,724,883 + PP_5661 0.51 +0.2 4,724,985 + PP_5661 0.89 +0.3 4,724,985 + PP_5661 0.89 -1.2 4,724,986 - PP_5661 0.89 -0.7 4,724,988 + -0.9 4,724,988 + -0.3 4,724,988 + +0.1 4,724,988 + +0.6 4,724,989 - +0.1 4,725,013 + -0.0 4,725,014 - -0.6 4,725,014 - -0.1 4,725,014 - -0.6 4,725,021 + -0.0 4,725,126 - -1.8 4,725,162 - PP_4183 0.11 -0.6 4,725,162 - PP_4183 0.11 -0.1 4,725,162 - PP_4183 0.11 +0.0 4,725,201 - PP_4183 0.16 +0.0 4,725,201 - PP_4183 0.16 +0.1 4,725,201 - PP_4183 0.16 +0.5 4,725,201 - PP_4183 0.16 -0.5 4,725,238 + PP_4183 0.21 -0.9 4,725,267 + PP_4183 0.25 -0.1 4,725,270 + PP_4183 0.25 +0.1 4,725,415 - PP_4183 0.44 -0.3 4,725,450 + PP_4183 0.49 +0.1 4,725,451 - PP_4183 0.49 +0.5 4,725,458 + PP_4183 0.50 +0.3 4,725,458 + PP_4183 0.50 +0.3 4,725,459 - PP_4183 0.50 -0.2 4,725,754 - PP_4183 0.89 +0.1 4,725,760 + -0.1 4,725,762 + -1.4 4,725,762 + -0.4 4,725,762 + -0.1 4,725,762 + -0.8 4,725,762 + -0.3 4,725,763 - -1.3 4,725,860 + -0.2 4,725,930 - +0.0 4,725,930 - -0.0 4,725,930 - +0.4 4,726,144 - -1.1 4,726,144 - -0.3 4,726,255 - PP_4184 0.14 -0.1 4,726,342 + PP_4184 0.21 -2.5 4,726,342 + PP_4184 0.21 -1.0 4,726,472 - PP_4184 0.31 +0.1 4,726,565 + PP_4184 0.38 -1.0 4,726,565 + PP_4184 0.38 -0.5 4,726,566 - PP_4184 0.38 +0.7 4,726,566 - PP_4184 0.38 -0.1 4,726,566 - PP_4184 0.38 +0.3 4,726,572 + PP_4184 0.38 -0.3 4,726,572 + PP_4184 0.38 -0.1 4,726,572 + PP_4184 0.38 +0.0 4,726,572 + PP_4184 0.38 -0.1 4,726,572 + PP_4184 0.38 +0.0 4,726,573 - PP_4184 0.38 -0.3 4,726,573 - PP_4184 0.38 -0.4 4,726,576 + PP_4184 0.39 -0.6 4,726,577 - PP_4184 0.39 -1.0 4,726,657 + PP_4184 0.45 -0.2 4,726,657 + PP_4184 0.45 +0.5 4,726,657 + PP_4184 0.45 +0.5 4,726,658 - PP_4184 0.45 -0.4 4,726,805 - PP_4184 0.56 -0.4
Or see this region's nucleotide sequence