Strain Fitness in Pseudomonas putida KT2440 around PP_1374

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2
1,565,585	+				-0.4
1,565,760	-		PP_1374	0.59	+0.0
1,565,760	-		PP_1374	0.59	-0.3
1,565,760	-		PP_1374	0.59	-0.7
1,565,792	+		PP_1374	0.75	-0.7
1,565,792	+		PP_1374	0.75	-0.3
1,565,793	-		PP_1374	0.76	-0.7
1,565,793	-		PP_1374	0.76	+0.1
1,565,793	-		PP_1374	0.76	-0.6
1,565,848	+				-0.3
1,565,849	-				-0.1
1,565,849	-				-0.4
1,565,858	-				-0.1
1,565,858	-				-0.0
1,565,863	+				-0.6
1,565,863	+				+0.0
1,565,864	-				-0.2
1,565,924	+				+0.1
1,565,925	-				-0.3
1,565,977	+				-0.2
1,565,978	-				+0.0
1,565,978	-				+0.2
1,566,006	-				-0.7
1,566,011	-				-1.1
1,566,011	-				-0.1
1,566,035	+				-1.0
1,566,036	-				+0.5
1,566,039	+				+0.3
1,566,101	-				-0.4
1,566,101	-				-1.5
1,566,132	-				+0.2
1,566,180	+				-0.2
1,566,180	+				-0.8
1,566,181	-				-1.0
1,566,181	-				-2.2
1,566,181	-				-0.5
1,566,181	-				+0.3
1,566,181	-				-0.6
1,566,181	-				-0.8
1,566,189	+				+0.1
1,566,189	+				-3.0
1,566,235	+				-0.6
1,566,235	+				-0.0
1,566,236	-				-0.3
1,566,617	+		PP_1375	0.34	-0.7
1,566,617	+		PP_1375	0.34	-0.7
1,566,660	+		PP_1375	0.39	-0.8
1,566,660	+		PP_1375	0.39	+0.6
1,566,660	+		PP_1375	0.39	-0.2
1,566,771	+		PP_1375	0.51	-0.0
1,566,771	+		PP_1375	0.51	-1.5
1,566,771	+		PP_1375	0.51	-1.4
1,566,771	+		PP_1375	0.51	-0.6
1,566,772	-		PP_1375	0.51	-0.8
1,566,772	-		PP_1375	0.51	+0.1
1,566,772	-		PP_1375	0.51	-0.1
1,566,772	-		PP_1375	0.51	-0.3
1,566,772	-		PP_1375	0.51	+0.1
1,566,772	-		PP_1375	0.51	-0.1
1,566,772	-		PP_1375	0.51	+0.3
1,566,772	-		PP_1375	0.51	+0.5
1,566,772	-		PP_1375	0.51	+0.3
1,566,773	+		PP_1375	0.52	+0.3
1,566,773	+		PP_1375	0.52	-0.3
1,566,773	+		PP_1375	0.52	+0.2
1,566,773	+		PP_1375	0.52	+0.7
1,566,773	+		PP_1375	0.52	+0.2
1,566,773	+		PP_1375	0.52	-0.1
1,566,774	-		PP_1375	0.52	+0.1
1,566,774	-		PP_1375	0.52	-0.1
1,566,774	-		PP_1375	0.52	-0.4
1,566,774	-		PP_1375	0.52	-0.2
1,566,774	-		PP_1375	0.52	+0.4
1,566,774	-		PP_1375	0.52	+0.3
1,566,775	+		PP_1375	0.52	-0.2