Strain Fitness in Pseudomonas putida KT2440 around PP_0628

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0626 and PP_0627 are separated by 84 nucleotidesPP_0627 and PP_0628 are separated by 132 nucleotidesPP_0628 and PP_5447 are separated by 55 nucleotidesPP_5447 and PP_0629 are separated by 86 nucleotides PP_0626: PP_0626 - NADH dehydrogenase, at 734,021 to 735,316 _0626 PP_0627: PP_0627 - conserved protein of unknown function, at 735,401 to 735,574 _0627 PP_0628: PP_0628 - conserved protein of unknown function, at 735,707 to 736,336 _0628 PP_5447: PP_5447 - conserved membrane protein of unknown function, at 736,392 to 736,823 _5447 PP_0629: PP_0629 - conserved membrane protein of unknown function, at 736,910 to 737,617 _0629 Position (kb) 735 736 737Strain fitness (log2 ratio) -1 0 1at 734.731 kb on - strand, within PP_0626at 734.731 kb on - strand, within PP_0626at 734.777 kb on + strand, within PP_0626at 734.778 kb on - strand, within PP_0626at 734.807 kb on + strand, within PP_0626at 734.853 kb on + strand, within PP_0626at 735.123 kb on + strand, within PP_0626at 735.123 kb on + strand, within PP_0626at 735.124 kb on - strand, within PP_0626at 735.124 kb on - strand, within PP_0626at 735.251 kb on - strandat 735.322 kb on + strandat 735.329 kb on + strandat 735.329 kb on + strandat 735.330 kb on - strandat 735.330 kb on - strandat 735.330 kb on - strandat 735.405 kb on - strandat 735.405 kb on - strandat 735.405 kb on - strandat 735.528 kb on + strand, within PP_0627at 735.528 kb on + strand, within PP_0627at 735.529 kb on - strand, within PP_0627at 735.529 kb on - strand, within PP_0627at 735.591 kb on + strandat 735.659 kb on + strandat 735.677 kb on + strandat 735.678 kb on - strandat 735.722 kb on + strandat 735.722 kb on + strandat 735.723 kb on - strandat 735.846 kb on + strand, within PP_0628at 735.847 kb on - strand, within PP_0628at 736.204 kb on - strand, within PP_0628at 736.261 kb on + strand, within PP_0628at 736.262 kb on - strand, within PP_0628at 736.306 kb on + strandat 736.307 kb on - strandat 736.307 kb on - strandat 736.320 kb on + strandat 736.368 kb on + strandat 736.368 kb on + strandat 736.368 kb on + strandat 736.368 kb on + strandat 736.368 kb on + strandat 736.368 kb on + strandat 736.368 kb on + strandat 736.368 kb on + strandat 736.369 kb on - strandat 736.475 kb on + strand, within PP_5447at 736.475 kb on + strand, within PP_5447at 736.509 kb on + strand, within PP_5447at 736.537 kb on + strand, within PP_5447at 736.537 kb on + strand, within PP_5447at 736.537 kb on + strand, within PP_5447at 736.538 kb on - strand, within PP_5447at 736.538 kb on - strand, within PP_5447at 736.613 kb on - strand, within PP_5447at 736.724 kb on - strand, within PP_5447at 736.761 kb on + strand, within PP_5447at 736.761 kb on + strand, within PP_5447at 736.794 kb on + strandat 736.892 kb on - strandat 736.892 kb on - strandat 736.903 kb on + strandat 736.903 kb on + strandat 736.925 kb on - strandat 736.925 kb on - strandat 736.988 kb on + strand, within PP_0629at 736.989 kb on - strand, within PP_0629at 737.135 kb on + strand, within PP_0629at 737.144 kb on - strand, within PP_0629at 737.297 kb on - strand, within PP_0629at 737.314 kb on - strand, within PP_0629at 737.314 kb on - strand, within PP_0629

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2
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734,731 - PP_0626 0.55 +0.0
734,731 - PP_0626 0.55 +0.2
734,777 + PP_0626 0.58 +0.1
734,778 - PP_0626 0.58 -0.2
734,807 + PP_0626 0.61 +0.1
734,853 + PP_0626 0.64 -0.3
735,123 + PP_0626 0.85 +0.1
735,123 + PP_0626 0.85 +0.3
735,124 - PP_0626 0.85 +0.2
735,124 - PP_0626 0.85 -0.4
735,251 - +0.0
735,322 + -0.1
735,329 + -0.0
735,329 + +0.3
735,330 - +0.5
735,330 - +0.0
735,330 - -1.3
735,405 - -0.2
735,405 - -0.1
735,405 - -0.2
735,528 + PP_0627 0.73 +0.5
735,528 + PP_0627 0.73 +0.3
735,529 - PP_0627 0.74 -0.6
735,529 - PP_0627 0.74 +0.1
735,591 + -0.0
735,659 + -0.5
735,677 + +0.4
735,678 - +0.1
735,722 + +0.6
735,722 + -0.0
735,723 - -0.0
735,846 + PP_0628 0.22 -0.2
735,847 - PP_0628 0.22 -0.8
736,204 - PP_0628 0.79 -0.6
736,261 + PP_0628 0.88 -0.1
736,262 - PP_0628 0.88 -0.5
736,306 + +1.0
736,307 - +0.2
736,307 - -0.0
736,320 + -0.6
736,368 + -0.6
736,368 + +0.4
736,368 + +0.2
736,368 + +0.0
736,368 + -0.4
736,368 + -1.2
736,368 + -0.9
736,368 + -0.1
736,369 - +0.2
736,475 + PP_5447 0.19 -0.1
736,475 + PP_5447 0.19 +0.2
736,509 + PP_5447 0.27 -0.5
736,537 + PP_5447 0.34 +0.0
736,537 + PP_5447 0.34 -0.1
736,537 + PP_5447 0.34 -0.3
736,538 - PP_5447 0.34 -0.2
736,538 - PP_5447 0.34 -0.3
736,613 - PP_5447 0.51 +0.5
736,724 - PP_5447 0.77 -0.7
736,761 + PP_5447 0.85 -0.4
736,761 + PP_5447 0.85 -0.0
736,794 + +0.2
736,892 - -0.1
736,892 - +0.1
736,903 + -0.4
736,903 + -1.1
736,925 - -0.3
736,925 - -0.2
736,988 + PP_0629 0.11 +0.5
736,989 - PP_0629 0.11 -0.2
737,135 + PP_0629 0.32 +0.6
737,144 - PP_0629 0.33 -0.2
737,297 - PP_0629 0.55 -0.1
737,314 - PP_0629 0.57 -0.2
737,314 - PP_0629 0.57 +0.3

Or see this region's nucleotide sequence