Strain Fitness in Pseudomonas putida KT2440 around PP_0264

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0263 and PP_0264 overlap by 4 nucleotidesPP_0264 and PP_0265 are separated by 42 nucleotidesPP_0265 and PP_0266 are separated by 277 nucleotides PP_0263: PP_0263 - C4-dicarboxylate transport transcriptional regulatory protein, at 316,524 to 317,930 _0263 PP_0264: PP_0264 - Sensor histidine kinase, at 317,927 to 319,741 _0264 PP_0265: PP_0265 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 319,784 to 320,329 _0265 PP_0266: PP_0266 - Agmatine deiminase, at 320,607 to 321,713 _0266 Position (kb) 317 318 319 320Strain fitness (log2 ratio) -2 -1 0 1at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.974 kb on - strand, within PP_0263at 316.999 kb on + strand, within PP_0263at 316.999 kb on + strand, within PP_0263at 317.002 kb on + strand, within PP_0263at 317.003 kb on - strand, within PP_0263at 317.065 kb on - strand, within PP_0263at 317.151 kb on + strand, within PP_0263at 317.151 kb on + strand, within PP_0263at 317.152 kb on - strand, within PP_0263at 317.152 kb on - strand, within PP_0263at 317.152 kb on - strand, within PP_0263at 317.522 kb on + strand, within PP_0263at 317.614 kb on + strand, within PP_0263at 317.614 kb on + strand, within PP_0263at 317.614 kb on + strand, within PP_0263at 317.614 kb on + strand, within PP_0263at 317.614 kb on + strand, within PP_0263at 317.615 kb on - strand, within PP_0263at 317.820 kb on + strandat 317.959 kb on + strandat 317.960 kb on - strandat 318.174 kb on + strand, within PP_0264at 318.174 kb on + strand, within PP_0264at 318.174 kb on + strand, within PP_0264at 318.174 kb on + strand, within PP_0264at 318.174 kb on + strand, within PP_0264at 318.174 kb on + strand, within PP_0264at 318.175 kb on - strand, within PP_0264at 318.175 kb on - strand, within PP_0264at 318.175 kb on - strand, within PP_0264at 318.175 kb on - strand, within PP_0264at 318.175 kb on - strand, within PP_0264at 318.180 kb on + strand, within PP_0264at 318.181 kb on - strand, within PP_0264at 318.210 kb on - strand, within PP_0264at 318.275 kb on + strand, within PP_0264at 318.275 kb on + strand, within PP_0264at 318.275 kb on + strand, within PP_0264at 318.529 kb on + strand, within PP_0264at 318.567 kb on + strand, within PP_0264at 318.567 kb on + strand, within PP_0264at 318.568 kb on - strand, within PP_0264at 318.816 kb on + strand, within PP_0264at 318.816 kb on + strand, within PP_0264at 318.816 kb on + strand, within PP_0264at 318.817 kb on - strand, within PP_0264at 318.817 kb on - strand, within PP_0264at 318.860 kb on + strand, within PP_0264at 318.861 kb on - strand, within PP_0264at 318.890 kb on + strand, within PP_0264at 319.191 kb on - strand, within PP_0264at 319.324 kb on - strand, within PP_0264at 319.324 kb on - strand, within PP_0264at 319.413 kb on + strand, within PP_0264at 319.413 kb on + strand, within PP_0264at 319.414 kb on - strand, within PP_0264at 319.414 kb on - strand, within PP_0264at 319.414 kb on - strand, within PP_0264at 319.584 kb on + strandat 319.584 kb on + strandat 319.584 kb on + strandat 319.584 kb on + strandat 319.585 kb on - strandat 319.585 kb on - strandat 319.585 kb on - strandat 319.585 kb on - strandat 319.629 kb on + strandat 319.629 kb on + strandat 319.629 kb on + strandat 319.632 kb on + strandat 319.632 kb on + strandat 319.632 kb on + strandat 319.633 kb on - strandat 319.633 kb on - strandat 319.662 kb on - strandat 319.662 kb on - strandat 319.662 kb on - strandat 319.664 kb on + strandat 319.664 kb on + strandat 319.664 kb on + strandat 319.664 kb on + strandat 319.665 kb on - strandat 319.774 kb on + strandat 319.775 kb on - strandat 319.775 kb on - strandat 319.775 kb on - strandat 319.781 kb on + strandat 319.781 kb on + strandat 319.782 kb on - strandat 319.782 kb on - strandat 319.786 kb on - strandat 319.786 kb on - strandat 319.897 kb on + strand, within PP_0265at 319.898 kb on - strand, within PP_0265at 319.920 kb on + strand, within PP_0265at 319.920 kb on + strand, within PP_0265at 319.920 kb on + strand, within PP_0265at 319.923 kb on + strand, within PP_0265at 319.924 kb on - strand, within PP_0265at 319.924 kb on - strand, within PP_0265at 319.938 kb on + strand, within PP_0265at 320.143 kb on - strand, within PP_0265at 320.297 kb on + strandat 320.298 kb on - strandat 320.298 kb on - strandat 320.298 kb on - strandat 320.298 kb on - strandat 320.314 kb on + strandat 320.356 kb on + strandat 320.357 kb on - strandat 320.357 kb on - strandat 320.357 kb on - strandat 320.357 kb on - strandat 320.366 kb on - strandat 320.366 kb on - strandat 320.395 kb on - strandat 320.412 kb on + strandat 320.412 kb on + strandat 320.412 kb on + strandat 320.412 kb on + strandat 320.413 kb on - strandat 320.413 kb on - strandat 320.413 kb on - strandat 320.413 kb on - strandat 320.413 kb on - strandat 320.423 kb on + strandat 320.423 kb on + strandat 320.424 kb on - strandat 320.424 kb on - strandat 320.428 kb on + strandat 320.681 kb on - strandat 320.681 kb on - strandat 320.681 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2
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316,941 + PP_0263 0.30 -1.1
316,941 + PP_0263 0.30 -0.1
316,941 + PP_0263 0.30 -0.0
316,941 + PP_0263 0.30 -0.1
316,941 + PP_0263 0.30 +0.1
316,941 + PP_0263 0.30 +0.6
316,942 - PP_0263 0.30 +0.1
316,942 - PP_0263 0.30 +0.7
316,942 - PP_0263 0.30 -0.3
316,942 - PP_0263 0.30 +0.2
316,942 - PP_0263 0.30 +0.1
316,942 - PP_0263 0.30 +0.2
316,942 - PP_0263 0.30 -0.9
316,942 - PP_0263 0.30 +0.5
316,942 - PP_0263 0.30 -0.6
316,942 - PP_0263 0.30 -0.2
316,942 - PP_0263 0.30 -0.9
316,974 - PP_0263 0.32 -1.2
316,999 + PP_0263 0.34 +0.7
316,999 + PP_0263 0.34 +0.2
317,002 + PP_0263 0.34 +0.5
317,003 - PP_0263 0.34 +0.1
317,065 - PP_0263 0.38 +0.1
317,151 + PP_0263 0.45 -0.1
317,151 + PP_0263 0.45 +0.1
317,152 - PP_0263 0.45 +0.3
317,152 - PP_0263 0.45 +0.0
317,152 - PP_0263 0.45 +0.2
317,522 + PP_0263 0.71 -0.1
317,614 + PP_0263 0.77 -0.5
317,614 + PP_0263 0.77 -0.0
317,614 + PP_0263 0.77 -0.3
317,614 + PP_0263 0.77 -0.1
317,614 + PP_0263 0.77 -1.2
317,615 - PP_0263 0.78 +0.5
317,820 + -0.0
317,959 + +0.0
317,960 - +0.2
318,174 + PP_0264 0.14 +0.3
318,174 + PP_0264 0.14 -1.0
318,174 + PP_0264 0.14 -0.7
318,174 + PP_0264 0.14 -0.3
318,174 + PP_0264 0.14 +0.0
318,174 + PP_0264 0.14 +0.1
318,175 - PP_0264 0.14 +0.3
318,175 - PP_0264 0.14 +0.4
318,175 - PP_0264 0.14 +0.5
318,175 - PP_0264 0.14 -0.0
318,175 - PP_0264 0.14 -1.7
318,180 + PP_0264 0.14 -0.1
318,181 - PP_0264 0.14 -0.8
318,210 - PP_0264 0.16 +0.4
318,275 + PP_0264 0.19 -0.9
318,275 + PP_0264 0.19 -0.4
318,275 + PP_0264 0.19 +0.2
318,529 + PP_0264 0.33 +0.2
318,567 + PP_0264 0.35 -0.0
318,567 + PP_0264 0.35 -0.0
318,568 - PP_0264 0.35 +0.5
318,816 + PP_0264 0.49 +0.3
318,816 + PP_0264 0.49 -0.1
318,816 + PP_0264 0.49 +0.3
318,817 - PP_0264 0.49 +0.3
318,817 - PP_0264 0.49 +0.4
318,860 + PP_0264 0.51 -0.2
318,861 - PP_0264 0.51 -2.0
318,890 + PP_0264 0.53 -0.4
319,191 - PP_0264 0.70 +0.1
319,324 - PP_0264 0.77 -0.3
319,324 - PP_0264 0.77 +0.2
319,413 + PP_0264 0.82 +0.3
319,413 + PP_0264 0.82 -0.2
319,414 - PP_0264 0.82 +0.4
319,414 - PP_0264 0.82 +0.1
319,414 - PP_0264 0.82 +0.0
319,584 + -0.2
319,584 + -0.8
319,584 + -2.6
319,584 + +0.6
319,585 - -0.8
319,585 - -0.1
319,585 - +0.5
319,585 - +0.2
319,629 + -0.8
319,629 + -0.8
319,629 + -0.1
319,632 + -0.6
319,632 + +0.1
319,632 + -0.3
319,633 - -0.3
319,633 - +0.5
319,662 - -0.4
319,662 - +0.5
319,662 - -0.0
319,664 + +0.2
319,664 + +0.1
319,664 + -0.5
319,664 + -0.3
319,665 - -0.0
319,774 + -0.6
319,775 - -0.2
319,775 - -0.2
319,775 - -0.6
319,781 + -0.4
319,781 + -0.0
319,782 - -0.2
319,782 - +0.3
319,786 - -0.2
319,786 - -0.1
319,897 + PP_0265 0.21 -0.7
319,898 - PP_0265 0.21 +0.1
319,920 + PP_0265 0.25 -0.4
319,920 + PP_0265 0.25 -0.1
319,920 + PP_0265 0.25 +0.4
319,923 + PP_0265 0.25 +0.2
319,924 - PP_0265 0.26 -0.2
319,924 - PP_0265 0.26 +0.5
319,938 + PP_0265 0.28 -0.5
320,143 - PP_0265 0.66 -0.6
320,297 + +0.6
320,298 - -0.2
320,298 - +1.5
320,298 - +0.1
320,298 - +0.0
320,314 + -0.2
320,356 + -0.1
320,357 - -0.1
320,357 - +0.1
320,357 - +0.3
320,357 - -0.5
320,366 - +0.0
320,366 - +0.2
320,395 - -0.9
320,412 + +0.1
320,412 + +0.4
320,412 + +0.1
320,412 + -0.0
320,413 - +0.6
320,413 - +0.2
320,413 - -0.3
320,413 - +0.1
320,413 - -0.1
320,423 + -1.1
320,423 + -0.5
320,424 - -0.3
320,424 - +0.4
320,428 + -0.7
320,681 - -0.8
320,681 - -0.4
320,681 - -0.6

Or see this region's nucleotide sequence