Strain Fitness in Pseudomonas putida KT2440 around PP_5358

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2
6,107,281	+				-0.3
6,107,281	+				+0.0
6,107,292	+				+0.4
6,107,359	+				+1.1
6,107,360	-				+0.8
6,107,360	-				-0.1
6,107,360	-				+0.2
6,107,490	+		PP_5357	0.24	-0.5
6,107,610	+		PP_5357	0.38	-0.6
6,107,611	-		PP_5357	0.38	-0.7
6,107,611	-		PP_5357	0.38	+0.0
6,107,821	+		PP_5357	0.62	-0.4
6,107,821	+		PP_5357	0.62	+0.3
6,107,821	+		PP_5357	0.62	+0.4
6,107,822	-		PP_5357	0.62	-0.2
6,107,822	-		PP_5357	0.62	-1.1
6,107,822	-		PP_5357	0.62	+0.4
6,107,822	-		PP_5357	0.62	+0.8
6,107,822	-		PP_5357	0.62	+0.1
6,107,822	-		PP_5357	0.62	+0.9
6,107,823	+		PP_5357	0.62	+0.2
6,107,823	+		PP_5357	0.62	+1.2
6,107,823	+		PP_5357	0.62	-0.3
6,107,824	-		PP_5357	0.62	-0.1
6,108,007	+		PP_5357	0.83	-0.9
6,108,008	-		PP_5357	0.83	+0.0
6,108,036	-		PP_5357	0.87	-0.7
6,108,143	+				+0.5
6,108,177	+				+0.8
6,108,178	-				-0.4
6,108,198	-				+0.8
6,108,198	-				-0.5
6,108,212	+				+0.3
6,108,213	-				-0.1
6,108,213	-				-0.3
6,108,213	-				-0.4
6,108,213	-				-0.4
6,108,213	-				+0.1
6,108,218	+				+0.3
6,108,219	-				-0.2
6,108,252	-				-0.0
6,108,252	-				-0.5
6,108,266	+				+0.1
6,108,266	+				+0.1
6,108,266	+				+0.0
6,108,266	+				+0.2
6,108,266	+				-0.3
6,108,267	-				+0.7
6,108,267	-				-0.3
6,108,267	-				-0.6
6,108,267	-				+0.3
6,108,267	-				-0.6
6,108,311	-		PP_5358	0.11	-0.8
6,108,311	-		PP_5358	0.11	-0.2
6,108,422	-		PP_5358	0.39	-0.1
6,108,434	+		PP_5358	0.42	+0.3
6,108,483	+		PP_5358	0.54	-0.7
6,108,483	+		PP_5358	0.54	-0.5
6,108,484	-		PP_5358	0.54	+0.0
6,108,484	-		PP_5358	0.54	+0.9
6,108,484	-		PP_5358	0.54	-0.8
6,108,568	+		PP_5358	0.75	-0.6
6,108,569	-		PP_5358	0.76	-0.1
6,108,576	+		PP_5358	0.77	-0.1
6,108,577	-		PP_5358	0.78	-0.2
6,108,619	+		PP_5358	0.88	+0.7
6,108,620	-		PP_5358	0.88	+0.1
6,108,620	-		PP_5358	0.88	-0.4
6,108,620	-		PP_5358	0.88	+0.0
6,108,620	-		PP_5358	0.88	-0.1
6,108,620	-		PP_5358	0.88	+0.2
6,108,782	+		PP_5359	0.12	+0.5
6,109,485	+		PP_5359	0.84	-0.2
6,109,528	-		PP_5359	0.89	+0.3
6,109,611	+				+0.2
6,109,611	+				-0.3
6,109,611	+				-0.5
6,109,612	-				+0.2
6,109,612	-				-0.6
6,109,612	-				-0.2